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View Structure Prediction Details

Protein: RVB1
Organism: Saccharomyces cerevisiae
Length: 463 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RVB1.

Description E-value Query
Range
Subject
Range
RUVB1_XENLA - RuvB-like 1 OS=Xenopus laevis GN=ruvbl1 PE=2 SV=1
0.0 [3..461] [2..452]
RUVB1_MOUSE - RuvB-like 1 OS=Mus musculus GN=Ruvbl1 PE=1 SV=1
tr|G3HIC5|G3HIC5... - DNA helicase OS=Cricetulus griseus GN=I79_010385 PE=4 SV=1
RUVB1_RAT - RuvB-like 1 OS=Rattus norvegicus GN=Ruvbl1 PE=1 SV=1
0.0 [3..461] [2..452]
ENSPTRT00000028667 - null
ENSMMUT000000262... - null, null
ENSCJAT00000010337 - null
tr|M3WAA5|M3WAA5... - RuvB-like helicase OS=Felis catus GN=RUVBL1 PE=3 SV=1
RUVBL1 - RuvB-like 1 (E. coli)
gi|73984468, gi|... - gi|73984478|ref|XP_857049.1| PREDICTED: similar to RuvB-like protein 1 isoform 6 [Canis familiaris],...
gi|60655671, gi|... - gi|60655671|gb|AAX32399.1| RuvB-like 1 [synthetic construct], gi|60655669|gb|AAX32398.1| RuvB-like 1...
ENSOCUP000000141... - pep:novel chromosome:oryCun2:9:7058221:7108095:-1 gene:ENSOCUG00000016510 transcript:ENSOCUT00000016...
0.0 [3..461] [2..452]
SPAPB8E5.09 - AAA family ATPase Rvb1
RUVB1_SCHPO - RuvB-like helicase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rvb1 PE=3 SV=1
0.0 [1..463] [1..455]
gi|7208771 - gi|7208771|emb|CAB76908.1| putative Ruv DNA-helicase [Cicer arietinum]
0.0 [3..461] [5..454]
gi|190404855 - gi|190404855|gb|EDV08122.1| hypothetical protein SCRG_00330 [Saccharomyces cerevisiae RM11-1a]
RUVB1_YEAST - RuvB-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RVB1 PE=1 SV=1
gi|207346605 - gi|207346605|gb|EDZ73054.1| YDR190Cp-like protein [Saccharomyces cerevisiae AWRI1631]
RVB1 - Essential protein involved in transcription regulation; component of chromatin remodeling complexes;...
gi|151942173 - gi|151942173|gb|EDN60529.1| RuVB-like protein [Saccharomyces cerevisiae YJM789]
0.0 [1..463] [1..463]
RIN1_ARATH - RuvB-like protein 1 OS=Arabidopsis thaliana GN=RIN1 PE=1 SV=1
0.0 [2..461] [4..454]
gi|7243680 - gi|7243680|gb|AAF43411.1|AF233278_1 pontin [Drosophila melanogaster]
0.0 [3..461] [2..452]

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Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAISEVKEN PGVNSSNSGA VTRTAAHTHI KGLGLDESGV AKRVEGGFVG QIEAREACGV  60
   61 IVDLIKAKKM SGRAILLAGG PSTGKTALAL AISQELGPKV PFCPLVGSEL YSVEVKKTET 120
  121 LMENFRRAIG LRIKETKEVY EGEVTELTPE DAENPLGGYG KTISHVIVGL KSAKGTKTLR 180
  181 LDPTIYESIQ REKVSIGDVI YIEANTGAVK RVGRSDAYAT EFDLETEEYV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.69897
Match: 1e32A_
Description: Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [231-325]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLPKGEVHKK KEIVQDVTLH DLDVANARPQ GGQDVISMMG QLLKPKKTEI TEKLRQEVNK  60
   61 VVAKYIDQGV AELIPGVLFI DEVNMLDIEI FTYLN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.69897
Match: 1e32A_
Description: Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [326-463]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KALESNIAPV VVLASNRGMT TVRGTEDVIS PHGVPPDLID RLLIVRTLPY DKDEIRTIIE  60
   61 RRATVERLQV ESSALDLLAT MGTETSLRYA LQLLAPCGIL AQTSNRKEIV VNDVNEAKLL 120
  121 FLDAKRSTKI LETSANYL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.522879
Match: 1jr3A_
Description: gamma subunit; gamma subunit of DNA polymerase III, N-domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle