YRC Public Data Repository - Protein Structure Prediction

Protein:	UPS3
Organism:	Saccharomyces cerevisiae
Length:	179 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UPS3.

Description	E-value	Query Range	Subject Range
PRLD1_MOUSE - PRELI domain-containing protein 1, mitochondrial OS=Mus musculus GN=Prelid1 PE=1 SV=1	246.0	[0..1]	[170..2]
gi\|57526905, gi\|... - gi\|57526905\|ref\|NP_001009636.1\| Preli [Rattus norvegicus], gi\|56789203\|gb\|AAH88284.1\| PRELI domain c...	246.0	[0..1]	[170..2]
gi\|73953256 - gi\|73953256\|ref\|XP_852403.1\| PREDICTED: similar to Px19-like protein (25 kDa protein of relevant evo...	245.0	[0..1]	[170..2]
gi\|109079906, gi... - gi\|109079908\|ref\|XP_001088735.1\| PREDICTED: px19-like protein isoform 4 [Macaca mulatta], gi\|1090799... ENSPTRT00000032492 - null	245.0	[0..1]	[170..2]
gi\|209736870 - gi\|209736870\|gb\|ACI69304.1\| PRELI domain-containing protein 1, mitochondrial precursor [Salmo salar] PRELID1 - PRELI domain containing 1 gi\|123995091, gi... - gi\|123995091\|gb\|ABM85147.1\| px19-like protein [synthetic construct], gi\|123980278\|gb\|ABM81968.1\| px1...	244.0	[0..1]	[170..2]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSFQKSYEF DYPWEKVTTA NWMKYPNKIS THVIAVDVLR RELKEHGDVL LTERLITIRQ  60
   61 NTPHWMSILV GNTNLAYVRE VSTVDRRDRS LTMRSCNMTF PHILKCYETV RYVPHPKNPS 120
  121 NVTLFKQDAK FLSGVPTKTF SEKVENWGVK RFSDNAVKGK VGFDSILAMF NDIWKNANE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	82.619789
Match:	PF04707.5
Description:	No description for PF04707.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.543	N/A	N/A	f.4.1	OMPA-like
View	Download	0.543	N/A	N/A	f.4.1	OMPA-like
View	Download	0.407	N/A	N/A	a.7.12	Description not found.
View	Download	0.400	N/A	N/A	a.1.1	Globin-like
View	Download	0.398	N/A	N/A	a.192.1	Description not found.
View	Download	0.391	N/A	N/A	a.1.1	Globin-like
View	Download	0.391	N/A	N/A	a.1.1	Globin-like
View	Download	0.388	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.384	N/A	N/A	d.32.1	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
View	Download	0.361	N/A	N/A	a.1.1	Globin-like
View	Download	0.338	N/A	N/A	a.126.1	Serum albumin-like
View	Download	0.281	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.273	N/A	N/A	a.126.1	Serum albumin-like
View	Download	0.232	N/A	N/A	a.126.1	Serum albumin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits