YRC Public Data Repository - Protein Structure Prediction

Protein:	UBC1
Organism:	Saccharomyces cerevisiae
Length:	215 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBC1.

Description	E-value	Query Range	Subject Range
gi\|151942159 - gi\|151942159\|gb\|EDN60515.1\| ubiquitin-conjugating enzyme [Saccharomyces cerevisiae YJM789] gi\|190404868 - gi\|190404868\|gb\|EDV08135.1\| ubiquitin-conjugating enzyme E2-24 kDa [Saccharomyces cerevisiae RM11-1a... gi\|207346631 - gi\|207346631\|gb\|EDZ73074.1\| YDR177Wp-like protein [Saccharomyces cerevisiae AWRI1631] UBC1 - Ubiquitin-conjugating enzyme that mediates selective degradation of short-lived and abnormal protein... UBC1_YEAST - Ubiquitin-conjugating enzyme E2 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC1 P...	2.0E-65	[1..215]	[1..215]
ubc1 - ubiquitin conjugating enzyme Ubc1 UBC1_SCHPO - Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc1 PE=...	3.0E-61	[1..214]	[1..216]
gi\|109066782 - gi\|109066782\|ref\|XP_001096263.1\| PREDICTED: similar to ubiquitin-conjugating enzyme E2D 4 (putative)... gi\|114613001, gi... - gi\|114613001\|ref\|XP_519070.2\| PREDICTED: ubiquitin-conjugating enzyme E2D 4 (putative) isoform 4 [Pa... UBE2D4 - ubiquitin-conjugating enzyme E2D 4 (putative)	4.0E-60	[2..150]	[1..147]
gi\|187034543, gi... - gi\|39593702\|emb\|CAE61994.1\| Hypothetical protein CBG06002 [Caenorhabditis briggsae], gi\|187034543\|em... gi\|170589261, gi... - gi\|170589261\|ref\|XP_001899392.1\| ubiquitin-conjugating enzyme ubc-2 [Brugia malayi], gi\|158593605\|gb... gi\|209489351 - gi\|209489351\|gb\|ACI49123.1\| hypothetical protein Cbre_JD14.011 [Caenorhabditis brenneri] let-70 - ubiquitin-conjugating enzyme E2-17 KD status:Confirmed UniProt:P35129 protein_id:CAA92745.1 CRE12761, FL81_0... - RP40331 WBGene00062522 locus:Cre-let-70 status:Confirmed, null gi\|157755991 - gi\|157755991\|ref\|XP_001670339.1\| Hypothetical protein CBG06002 [Caenorhabditis briggsae AF16]	5.0E-60	[2..150]	[1..147]
gi\|11762186 - gi\|11762186\|gb\|AAG40371.1\|AF325019_1 AT4g27960 [Arabidopsis thaliana]	3.0E-59	[2..150]	[31..177]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRAKRIMKE IQAVKDDPAA HITLEFVSES DIHHLKGTFL GPPGTPYEGG KFVVDIEVPM  60
   61 EYPFKPPKMQ FDTKVYHPNI SSVTGAICLD ILKNAWSPVI TLKSALISLQ ALLQSPEPND 120
  121 PQDAEVAQHY LRDRESFNKT AALWTRLYAS ETSNGQKGNV EESDLYGIDH DLIDEFESQG 180
  181 FEKDKIVEVL RRLGVKSLDP NDNNTANRII EELLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	877.69897
Match:	1fxtA_
Description:	Ubiquitin conjugating enzyme, UBC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits