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View Structure Prediction Details

Protein: YDR170W-A
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR170W-A.

Description E-value Query
Range
Subject
Range
YNL284C-B - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YN11B_YEAST - Transposon Ty1-NL1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
676.0 [0..1] [435..1]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS PISHGSACAS VTSKEVQTTQ DPLDISASKT EECEKVFTQA NSQQPTTPPS  60
   61 AAVPENHHHA SPQAAQVPLP QNGPYPQQRM MTPQQANISG WPVYGHPSLM PYPPYQMSPM 120
  121 YAPPGAQSQF TQYPQYVGTH LNTPSPESGN SFPDSSSAKS NMTSTNQHVR PPPIL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 77.886057
Match: PF01021.10
Description: No description for PF01021.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [176-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSPNDFLNWV KIYIKFLQNS NLGDIIPTAT RKAVRQMTDD ELTFLCHTFQ LFALSQFLPT  60
   61 WVKDILSVDY TDIMKILSKS INKMQSDTQE VNDITTLANL HYNGSTPADA FEAEVTNILD 120
  121 RLKNNGIPIN NKVACQFIMR GLSGEYKFLR YARH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.871 a.118.8 TPR-like
View Download 0.573 a.208.1 Description not found.
View Download 0.555 a.118.8 TPR-like
View Download 0.500 c.23.1 CheY-like
View Download 0.479 a.72.1 Functional domain of the splicing factor Prp18
View Download 0.479 a.72.1 Functional domain of the splicing factor Prp18
View Download 0.405 a.23.2 Diol dehydratase, gamma subunit
View Download 0.405 a.23.2 Diol dehydratase, gamma subunit
View Download 0.332 a.1.1 Globin-like
View Download 0.325 d.95.2 Homing endonucleases
View Download 0.305 a.4.12 TrpR-like
View Download 0.300 a.23.2 Diol dehydratase, gamma subunit
View Download 0.297 a.23.2 Diol dehydratase, gamma subunit
View Download 0.214 a.23.2 Diol dehydratase, gamma subunit

Predicted Domain #3
Region A:
Residues: [330-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYIHMTVADL FSDIHSMYEE QQESKRNKST YRRSPSDEKK DSRTYTNTTK PKSITRNSQK  60
   61 PNNSQSRTAR AHNVSTSNNF PGPDNDLIRG STTEPIQLKN KHDLHLRPGT Y

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.303 N/A N/A a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.244 N/A N/A a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.208 N/A N/A d.17.7 Description not found.
View Download 0.207 N/A N/A a.1.1 Globin-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle