YRC Public Data Repository - Protein Structure Prediction

Protein:	RUB1
Organism:	Saccharomyces cerevisiae
Length:	77 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RUB1.

Description	E-value	Query Range	Subject Range
gi\|5523975 - gi\|5523975\|gb\|AAD44040.1\|AF104023_1 polyprotein [Bovine viral diarrhea virus genotype 2]	4.0E-38	[1..76]	[177..252]
gi\|11528469 - gi\|11528469\|gb\|AAG37291.1\| humanized L1/ubiqutin hybrid protein [synthetic construct]	7.0E-38	[1..76]	[1..76]
gi\|29612581 - gi\|29612581\|gb\|AAH49478.1\| Zgc:66168 protein [Danio rerio]	3.0E-37	[1..76]	[17..92]
gi\|39725569 - gi\|39725569\|dbj\|BAD04937.1\| poryprotein [Bovine viral diarrhea virus 190cp]	4.0E-37	[1..76]	[1946..2021]
gi\|39725571 - gi\|39725571\|dbj\|BAD04938.1\| poryprotein [Bovine viral diarrhea virus T-20]	9.0E-37	[1..76]	[1464..1539]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVKVKTLTG KEISVELKES DLVYHIKELL EEKEGIPPSQ QRLIFQGKQI DDKLTVTDAH  60
   61 LVEGMQLHLV LTLRGGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	1aarA_
Description:	Ubiquitin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits