YRC Public Data Repository - Protein Structure Prediction

Protein:	YDR115W
Organism:	Saccharomyces cerevisiae
Length:	105 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR115W.

Description	E-value	Query Range	Subject Range
RM34_SCHPO - Probable 54S ribosomal protein L34, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... SPBC21C3.04c - mitochondrial ribosomal protein subunit L34	83.0	[0..51]	[105..54]
gi\|49652964, gi\|... - gi\|50413677\|ref\|XP_457299.1\| hypothetical protein DEHA0B07898g [Debaryomyces hansenii CBS767], gi\|49... gi\|49652964 - gi\|49652964\|emb\|CAG85302.1\| DEHA2B07876p [Debaryomyces hansenii]	76.0	[0..11]	[105..18]
gi\|55741479 - ref\|NP_001006966.1\| mitochondrial ribosomal protein L34 [Rattus norvegicus] gi\|149036130, gi... - gi\|55741479\|ref\|NP_001006966.1\| mitochondrial ribosomal protein L34 [Rattus norvegicus], gi\|54261631...	76.0	[0..54]	[105..40]
gi\|114675984 - gi\|114675984\|ref\|XP_001161111.1\| PREDICTED: hypothetical protein [Pan troglodytes]	76.0	[0..55]	[102..69]
RM34_MOUSE - 39S ribosomal protein L34, mitochondrial OS=Mus musculus GN=Mrpl34 PE=1 SV=1	75.0	[0..54]	[105..41]
gi\|45201176, gi\|... - gi\|45201176\|ref\|NP_986746.1\| AGR081Cp [Ashbya gossypii ATCC 10895], gi\|44985959\|gb\|AAS54570.1\| AGR08... gi\|44985959 - gi\|44985959\|gb\|AAS54570.1\| AGR081Cp [Ashbya gossypii ATCC 10895]	74.0	[0..3]	[105..25]
MRPL34 - mitochondrial ribosomal protein L34 ENSPTRT00000056231 - null	73.0	[0..55]	[105..42]
RM34_MACFA - 39S ribosomal protein L34, mitochondrial OS=Macaca fascicularis GN=MRPL34 PE=3 SV=1	73.0	[0..55]	[105..42]
gi\|50807217 - gi\|50807217\|ref\|XP_424552.1\| PREDICTED: hypothetical protein [Gallus gallus]	73.0	[0..19]	[105..30]
gi\|49524350, gi\|... - gi\|50285237\|ref\|XP_445047.1\| unnamed protein product [Candida glabrata], gi\|49524350\|emb\|CAG57947.1\|...	72.0	[0..56]	[105..75]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLFARLCQP QSRRMFSSIS SFSALSVLRP QTGMLLNSSP LKTPSFTPLG FGLIGQRRWK  60
   61 SRGNTYQPST LKRKRTFGFL ARAKSKQGSK ILKRRKLKGR WFLSH

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Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.356	a.118.1	ARM repeat
View	Download	0.324	a.118.1	ARM repeat
View	Download	0.309	d.150.1	4'-phosphopantetheinyl transferase
View	Download	0.309	a.77.1	DEATH domain
View	Download	0.300	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.295	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.249	a.118.1	ARM repeat
View	Download	0.213	d.79.7	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits