YRC Public Data Repository - Protein Structure Prediction

Protein:	TVP15
Organism:	Saccharomyces cerevisiae
Length:	143 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TVP15.

Description	E-value	Query Range	Subject Range
TVP15_SCHPO - Golgi apparatus membrane protein tvp15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tvp... SPAC6F12.04 - COPI-coated vesicle associated protein	143.0	[0..7]	[143..5]
gi\|49528362 - gi\|49528362\|emb\|CAG62019.1\| unnamed protein product [Candida glabrata] gi\|50293275, gi\|... - gi\|50293275\|ref\|XP_449049.1\| unnamed protein product [Candida glabrata], gi\|49528362\|emb\|CAG62019.1\|...	86.0	[0..4]	[131..3]
gi\|67515787, gi\|... - gi\|67515787\|ref\|XP_657779.1\| hypothetical protein AN0175.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	84.0	[0..12]	[128..318]
gi\|42550908, gi\|... - gi\|46121407\|ref\|XP_385258.1\| hypothetical protein FG05082.1 [Gibberella zeae PH-1], gi\|42550908\|gb\|E...	78.0	[0..1]	[123..1]
gi\|28923566, gi\|... - gi\|32415910\|ref\|XP_328433.1\| predicted protein [Neurospora crassa], gi\|28923566\|gb\|EAA32741.1\| conse... gi\|85105499 - gi\|85105499\|ref\|XP_961977.1\| hypothetical protein NCU07727 [Neurospora crassa OR74A]	75.0	[0..9]	[123..7]
orf19.3076, orf1... - orf19.3076 CGDID:CAL0001485 Assembly 19, Contig19-10166 (6708, 6310) CDS, reverse complemented, tran... gi\|46437007, gi\|... - gi\|68481223\|ref\|XP_715386.1\| hypothetical protein CaO19.3076 [Candida albicans SC5314], gi\|68481082\|...	73.0	[0..9]	[134..9]
gi\|50548019, gi\|... - gi\|50548019\|ref\|XP_501479.1\| YALI0C05577p [Yarrowia lipolytica], gi\|49647346\|emb\|CAG81780.1\| unnamed... gi\|49647346 - gi\|49647346\|emb\|CAG81780.1\| YALI0C05577p [Yarrowia lipolytica]	73.0	[0..9]	[123..7]
gi\|88180423, gi\|... - gi\|88180423\|gb\|EAQ87891.1\| hypothetical protein CHGG_04510 [Chaetomium globosum CBS 148.51], gi\|1161...	67.0	[0..9]	[123..7]
gi\|119192530, gi... - gi\|90305657\|gb\|EAS35288.1\| hypothetical protein CIMG_00642 [Coccidioides immitis RS], gi\|119192530\|r...	66.0	[0..8]	[123..6]
gi\|39952571, gi\|... - gi\|39952571\|ref\|XP_363919.1\| hypothetical protein MG01845.4 [Magnaporthe grisea 70-15], gb\|EAA56194....	66.0	[0..21]	[123..2]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIPPKFFK IANISIGCID IIAALSQLTY IFTNLNVFLL AVYGLALSVP IVYLEFKVPS  60
   61 NLYRYASFYF SFLGRGLSYI LLSLIISFGG IYNILAGMFT FILGVAFIVF HFSQFVEEPA 120
  121 NFRAPGSSLS IGDDDIDDDD DMI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	80.657577
Match:	PF08507.1
Description:	No description for PF08507.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits