YRC Public Data Repository - Protein Structure Prediction

Protein:	YDR089W
Organism:	Saccharomyces cerevisiae
Length:	869 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR089W.

Description	E-value	Query Range	Subject Range
gi\|914873 - gi\|914873\|emb\|CAA90448.1\| unknown [Saccharomyces cerevisiae]	1233.0	[0..249]	[869..1]
gi\|50285819, gi\|... - gi\|50285819\|ref\|XP_445338.1\| unnamed protein product [Candida glabrata], gi\|49524642\|emb\|CAG58244.1\|... gi\|49524642 - gi\|49524642\|emb\|CAG58244.1\| unnamed protein product [Candida glabrata]	474.0	[0..1]	[869..1]
gi\|49644868 - gi\|49644868\|emb\|CAG98440.1\| KLLA0F14509p [Kluyveromyces lactis] gi\|49644868, gi\|... - gi\|50311415\|ref\|XP_455732.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644868\|emb\|CAG9844...	418.0	[0..1]	[869..1]
gi\|45201256, gi\|... - gi\|45201256\|ref\|NP_986826.1\| AGR160Wp [Ashbya gossypii ATCC 10895], gi\|44986110\|gb\|AAS54650.1\| AGR16... gi\|44986110 - gi\|44986110\|gb\|AAS54650.1\| AGR160Wp [Ashbya gossypii ATCC 10895]	387.0	[0..14]	[868..23]
gi\|49648647, gi\|... - gi\|50550613\|ref\|XP_502779.1\| YALI0D13156p [Yarrowia lipolytica], gi\|49648647\|emb\|CAG80967.1\| unnamed... gi\|49648647 - gi\|49648647\|emb\|CAG80967.1\| YALI0D13156p [Yarrowia lipolytica]	125.0	[0..1]	[864..1]
gi\|50423985, gi\|... - gi\|50423985\|ref\|XP_460577.1\| hypothetical protein DEHA0F05390g [Debaryomyces hansenii CBS767], gi\|49...	64.0	[0..1]	[176..1]
gi\|46136861, gi\|... - gi\|46136861\|ref\|XP_390122.1\| hypothetical protein FG09946.1 [Gibberella zeae PH-1], gi\|42544841\|gb\|E...	59.0	[0..1]	[139..1]
gi\|164426640, gi... - gi\|164426640\|ref\|XP_957589.2\| hypothetical protein NCU03950 [Neurospora crassa OR74A], gi\|157071418\|... gi\|40882332 - gi\|40882332\|emb\|CAF06154.1\| conserved hypothetical protein [Neurospora crassa]	57.0	[0..1]	[139..1]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFEDRILNK SIPEWKFYNI NYEKLKVAIK KVTAYDYDNP NDSGMEKLLN QCSVAFDQEF  60
   61 QNVNLFVSLK IKEISTRILS VESSIIDFSK GLNKTSRNRF NLRKLKIINA HVDDCNFELQ 120
  121 LLSRFLIIQR IALRKLFKKL LNEFPQDSEN PLTASEYVTS IRNSESL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.481486
Match:	PF03105
Description:	SPX domain

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [168-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNGHEGISFM KLDLDPYLLE VSLIVDVLHD LENKLEDATE PAVEQRSLNR SDESAHTSSS  60
   61 PEANNSSLPA SPRSIPLLSN K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.495	a.25.1	Ferritin-like
View	Download	0.495	a.25.1	Ferritin-like
View	Download	0.309	a.25.1	Ferritin-like
View	Download	0.304	f.48.1	Description not found.
View	Download	0.301	a.25.1	Ferritin-like
View	Download	0.301	a.25.1	Ferritin-like
View	Download	0.300	a.47.2	t-snare proteins
View	Download	0.291	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain
View	Download	0.280	a.24.13	Domain of the SRP/SRP receptor G-proteins

Predicted Domain #3

Region A:
Residues: [249-869]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTSKMIDSSL EFDTALIDKA ENLGRFLLSS EDIEGLKFML LNIGFRIIDD SIISTSKEIL  60
   61 DTTDNINSAG NKSIRSAKSF NDLQHTLSLS KQKNILPSAV QSNEKYVSIS ILDTVGNEGS 120
  121 PLLLTDDNIN QHPNMIVSST AEDTCIVMCH VGGLRNHVVT NDLLLRDVKN ILSAMRSGND 180
  181 TKNISALINS LDPSPISKIA LEWIQSHRLK TIEPKLDFKR TRFISADNGD IYLIALDESI 240
  241 TIGNVSTLPF PILEIKKLSR SSGLSQTAIN EDNKFKQLMK SVVTNEFQCS LIPPDLTTWK 300
  301 ICLELVHSNE LQNDLFQLLL RDQYKLNSDD SLSPDEFFQL GKDRLEEEFD LTGPINNSQG 360
  361 SVDSGRRVRI HKKSKQSDNE TKKKPIRYWN EFDEQEEDNL DNAFYIDTNG SRSTTDNEES 420
  421 LLLRNSPPDY GFILFSRNFI NRTYDFCEKL RNLIRHDKKT SPDLFQNSKH PHCSSTNYGS 480
  481 VASFGSQSTS ASYDDVQRYL QYQQQDIEDS QSIYEYRHDE VVTFLYLSAL LTSCIMASVC 540
  541 LGIVLSLFRG QSNNEIDLEI QNILIAIIII SLLVSLILIC ACLLLLFSRF TLAPIWHYVG 600
  601 CFTMFFSVTG TVCYGMIEIF F

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits