YRC Public Data Repository - Protein Structure Prediction

Protein:	TVP23
Organism:	Saccharomyces cerevisiae
Length:	199 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TVP23.

Description	E-value	Query Range	Subject Range
TVP23_YEAST - Golgi apparatus membrane protein TVP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T... TVP23 - Integral membrane protein localized to late Golgi vesicles along with the v-SNARE Tlg2p; green fluor... TVP23_YEAS7 - Golgi apparatus membrane protein TVP23 OS=Saccharomyces cerevisiae (strain YJM789) GN=TVP23 PE=3 SV=... gi\|190404949 - gi\|190404949\|gb\|EDV08216.1\| TLG2-vesicle protein of 23 kDa [Saccharomyces cerevisiae RM11-1a] gi\|207346767 - gi\|207346767\|gb\|EDZ73164.1\| YDR084Cp-like protein [Saccharomyces cerevisiae AWRI1631]	8.0E-78	[1..199]	[1..199]
FAM18B - family with sequence similarity 18, member B	2.0E-56	[13..157]	[30..175]
TV23B_MOUSE - Golgi apparatus membrane protein TVP23 homolog B OS=Mus musculus GN=Tvp23b PE=1 SV=1	1.0E-54	[13..157]	[30..175]
CG5021-PC - This gene is referred to in FlyBase by the symbol Dmel\CG5021 (CG5021, FBgn0035944). It is a protein...	2.0E-52	[2..157]	[23..178]
TVP23_SCHPO - Golgi apparatus membrane protein tvp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tvp... SPBC2A9.05c - DUF846 family protein	3.0E-51	[12..173]	[43..201]
gi\|4337178, gi\|2... - gi\|4337178\|gb\|AAD18099.1\| T31J12.5 [Arabidopsis thaliana], pir\|\|D86226 protein T31J12.5 [imported] -...	1.0E-50	[1..159]	[1..158]
CE06925 - status:Partially_confirmed UniProt:Q18449 protein_id:AAB00701.1	2.0E-39	[17..159]	[73..211]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQARNFYNT ILKSSHPLLL SFHLAGKAVP IVFYIIGSMF LNFTPQFITV VLLLSFDFYL  60
   61 TKNITGRKLV QLRWWYDSTD VNKDSNFTFE SYKQYAPGPP INAIDSKLFW WSMYVTPVIW 120
  121 GVFAVLCLLR LKIFYLILVI VAMCLTAWNT YGFRCCDRWE PNSGQSDGQD TNNWFALPSV 180
  181 PGFENLSRLA NIQSFFQRQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits