YRC Public Data Repository - Protein Structure Prediction

Protein:	PET100
Organism:	Saccharomyces cerevisiae
Length:	111 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PET100.

Description	E-value	Query Range	Subject Range
gi\|49641855 - gi\|49641855\|emb\|CAH01573.1\| KLLA0C11693p [Kluyveromyces lactis] gi\|50305525, gi\|... - gi\|50305525\|ref\|XP_452722.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641855\|emb\|CAH0157...	164.0	[0..9]	[109..7]
gi\|49527971 - gi\|49527971\|emb\|CAG61622.1\| unnamed protein product [Candida glabrata] gi\|50292453, gi\|... - gi\|50292453\|ref\|XP_448659.1\| unnamed protein product [Candida glabrata], gi\|49527971\|emb\|CAG61622.1\|...	163.0	[0..9]	[108..5]
gi\|45201242, gi\|... - gi\|45201242\|ref\|NP_986812.1\| AGR146Wp [Ashbya gossypii ATCC 10895], gi\|44986096\|gb\|AAS54636.1\| AGR14... gi\|44986096 - gi\|44986096\|gb\|AAS54636.1\| AGR146Wp [Ashbya gossypii ATCC 10895]	159.0	[0..9]	[107..5]
gi\|3900934 - gi\|3900934\|emb\|CAA10141.1\| Pet100 protein [Candida albicans]	114.0	[0..32]	[89..1]
gi\|50418565, gi\|... - gi\|50418565\|ref\|XP_457799.1\| hypothetical protein DEHA0C03135g [Debaryomyces hansenii CBS767], gi\|49... gi\|49653465 - gi\|49653465\|emb\|CAG85839.1\| DEHA2C02750p [Debaryomyces hansenii]	97.0	[0..32]	[96..1]
gi\|49649123 - gi\|49649123\|emb\|CAG81459.1\| YALI0D24992p [Yarrowia lipolytica] gi\|49649123, gi\|... - gi\|50551561\|ref\|XP_503255.1\| YALI0D24992p [Yarrowia lipolytica], gi\|49649123\|emb\|CAG81459.1\| unnamed...	95.0	[0..25]	[106..3]
gi\|46125055, gi\|... - gi\|46125055\|ref\|XP_387081.1\| hypothetical protein FG06905.1 [Gibberella zeae PH-1], gi\|42553651\|gb\|E...	75.0	[0..16]	[88..6]
gi\|49099096, gi\|... - gi\|67540846\|ref\|XP_664197.1\| hypothetical protein AN6593.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	73.0	[0..14]	[87..11]
gi\|111070207, gi... - gi\|169597781\|ref\|XP_001792314.1\| hypothetical protein SNOG_01678 [Phaeosphaeria nodorum SN15], gi\|11...	69.0	[0..16]	[80..6]
gi\|88714372 - gi\|88714372\|gb\|AAT77151.2\| mitochondrial cytochrome c oxidase assembly factor [Paracoccidioides bras...	68.0	[0..14]	[84..12]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLFNNFKFK YTRAQLEIFR FSFCLLAPVA VMYYIGTDTD KKLNVPGFWP DPATLNQIPK  60
   61 EPYEIKAELA RMKKERLEKR LRLEKKIQEE FGLDLEEEKE KIKRDLALKK G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.563	a.7.8	GAT domain
View	Download	0.538	a.7.8	GAT domain
View	Download	0.444	d.110.4	SNARE-like
View	Download	0.410	d.42.1	POZ domain
View	Download	0.313	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits