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View Structure Prediction Details

Protein: TFB5
Organism: Saccharomyces cerevisiae
Length: 72 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFB5.

Description E-value Query
Range
Subject
Range
gi|8778626, gi|2... - gi|8778626|gb|AAF79634.1|AC025416_8 F5O11.12 [Arabidopsis thaliana], pir||E86258 protein F5O11.12 [i...
99.0 [0..1] [63..43]
TF2H5_CHICK - General transcription factor IIH subunit 5 OS=Gallus gallus GN=GTF2H5 PE=3 SV=1
92.0 [0..1] [68..1]
gi|109460743, gi... - gi|186910271|ref|NP_001119560.1| general transcription factor IIH, polypeptide 5 [Rattus norvegicus]...
ENSCJAT00000006974 - null
gi|109072254 - gi|109072254|ref|XP_001092693.1| PREDICTED: similar to general transcription factor IIH, polypeptide...
tr|M3X5Q7|M3X5Q7... - General transcription factor IIH subunit 5 OS=Felis catus GN=GTF2H5 PE=4 SV=1
GTF2H5 - general transcription factor IIH, polypeptide 5
CCDS5256.1_1 - null
gi|114609947, gi... - gi|114609951|ref|XP_001145020.1| PREDICTED: general transcription factor IIH, polypeptide 5 isoform ...
TF2H5_BOVIN - General transcription factor IIH subunit 5 OS=Bos taurus GN=GTF2H5 PE=3 SV=1
tr|G1U5T7|G1U5T7... - pep:novel chromosome:oryCun2:12:148319860:148334709:1 gene:ENSOCUG00000025009 transcript:ENSOCUT0000...
tr|G3HFX4|G3HFX4... - General transcription factor IIH subunit 5 OS=Cricetulus griseus GN=I79_009491 PE=4 SV=1
gi|73946181 - gi|73946181|ref|XP_855012.1| PREDICTED: similar to general transcription factor IIH, polypeptide 5 [...
gi|167773397, gi... - gi|208968459|dbj|BAG74068.1| general transcription factor IIH, polypeptide 5 [synthetic construct], ...
92.0 [0..1] [68..1]
TFB5_ASHGO - RNA polymerase II transcription factor B subunit 5 OS=Ashbya gossypii GN=TFB5 PE=3 SV=1
TFB5_ASHGO - RNA polymerase II transcription factor B subunit 5 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.5...
92.0 [0..1] [71..1]
TFB5_KLULA - RNA polymerase II transcription factor B subunit 5 OS=Kluyveromyces lactis GN=TFB5 PE=3 SV=2
TFB5_KLULA - RNA polymerase II transcription factor B subunit 5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2...
91.0 [0..1] [71..1]
TF2H5_MOUSE - General transcription factor IIH subunit 5 OS=Mus musculus GN=Gtf2h5 PE=1 SV=1
91.0 [0..1] [68..1]
gi|49641857, gi|... - gi|50305529|ref|XP_452724.1| unnamed protein product [Kluyveromyces lactis], gi|49641857|emb|CAH0157...
90.0 [0..1] [71..15]
gi|225716198 - gi|225716198|gb|ACO13945.1| General transcription factor IIH subunit 5 [Esox lucius]
gi|125846362, gi... - gi|56208041|emb|CAI20614.1| novel protein similar to vertebrate TFIIH basal transcription factor com...
90.0 [0..1] [68..1]
gi|62859795 - gi|62859795|ref|NP_001017298.1| general transcription factor IIH, polypeptide 5 [Xenopus (Silurana) ...
89.0 [0..1] [68..1]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARARKGALV QCDPSIKALI LQIDAKMSDI VLEELDDTHL LVNPSKVEFV KHELNRLLSK  60
   61 NIYNPMDEEE NQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.154902
Match: 2jnjA
Description: No description for 2jnjA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle