YRC Public Data Repository - Protein Structure Prediction

Protein:	YDR061W
Organism:	Saccharomyces cerevisiae
Length:	539 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR061W.

Description	E-value	Query Range	Subject Range
gi\|4062406, gi\|4... - dbj\|BAA35524.1\| Hypothetical ABC transporter ATP-binding protein in bcr 5'region. [Escherichia coli ...	0.0	[7..537]	[48..583]
YLIA_ECOLI - (P75796) Hypothetical ABC transporter ATP-binding protein yliA	0.0	[7..537]	[18..553]
gi\|13360367, gi\|... - gi\|15830162\|ref\|NP_308935.1\| putative ATP-binding component of a transport system [Escherichia coli ... gi\|209775630, gi... - pir\|\|D90742 hypothetical protein ECs0908 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|13360367, gi\|... - gi\|15830162\|ref\|NP_308935.1\| glutathione transporter ATP-binding protein [Escherichia coli O157:H7 s...	0.0	[8..537]	[2..536]
gi\|15800579, gi\|... - gi\|15800579\|ref\|NP_286593.1\| glutathione transporter ATP-binding protein [Escherichia coli O157:H7 E... gi\|25384849 - pir\|\|G85592 hypothetical protein Z1053 [imported] - Escherichia coli (strain O157:H7, substrain EDL...	0.0	[8..537]	[2..536]
RBSA_CLOPE - Ribose import ATP-binding protein RbsA OS=Clostridium perfringens (strain 13 / Type A) GN=rbsA PE=3 ... RBSA_CLOPE - Ribose import ATP-binding protein RbsA OS=Clostridium perfringens GN=rbsA PE=3 SV=1	0.0	[3..532]	[1..478]
gi\|25384593 - pir\|\|AB2971 hypothetical protein Atu3371 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) RGMG2_AGRFC - Putative ribose/galactose/methyl galactoside import ATP-binding protein 2 OS=Agrobacterium fabrum (s...	0.0	[4..532]	[20..493]
RBSA1_PASMU - Ribose import ATP-binding protein RbsA 1 OS=Pasteurella multocida (strain Pm70) GN=rbsA1 PE=3 SV=1 RBSA1_PASMU - Ribose import ATP-binding protein rbsA 1 OS=Pasteurella multocida GN=rbsA1 PE=3 SV=1	0.0	[5..532]	[4..474]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNKFVVRI TNALFKSSLA SNSPPVYPKR IRHFEILPNE KWVIWGPGKG KFLDVLNNKY  60
   61 ICEPPLSLRF GFLKESSNIL PRIEQVAFKG VMPTAHLSAR YEYFKDDYDQ TCKQFIFDKA 120
  121 SGSNAVSYKV ETNNRQINME LYNALVENLN LSSLQDRWVM GLSNGQMRRA RLARSILKEP 180
  181 DLLLIDDPFL GLDPAAIATI SQFLAKYDSI EVSGGCPIVI GLRYQDTIPA WCTHICCVDE 240
  241 KNGILFEGPI EKLQSKMDET RSRALKELEQ LKKASNSKED ISINDLICIH PMYGKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.512579
Match:	1g6hA_
Description:	MJ1267
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [297-539]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHEIIKMPHL IELDGLSVSY KGEAVLENLH WKVQPGSKWH IRGDNGSGKS TLLSLLTAEH  60
   61 PQSWNSRVID NGVPRRTGKT NYFDLNSKIG MSSPELHAIF LKNAGGRLNI RESVATGYHE 120
  121 ASSNNYLPIW KRLDKNSQEI VNMYLKYFGL DKDADSVLFE QLSVSDQKLV LFVRSLIKMP 180
  181 QILILDEAFS GMEVEPMMRC HEFLEEWPGT VLVVAHVAEE TPKCAHYLRL ISPGEYEIGD 240
  241 MEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.512579
Match:	1jj7A_
Description:	Peptide transporter Tap1, C-terminal ABC domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits