| Protein: | MAK21 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1025 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAK21.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1025] | [1..1025] |
|
|
0.0 | [29..968] | [17..933] |
|
|
0.0 | [174..1021] | [2..859] |
|
|
0.0 | [39..856] | [1..793] |
|
|
0.0 | [123..908] | [11..796] |
|
|
0.0 | [82..701] | [2..636] |
|
|
0.0 | [303..805] | [16..499] |
|
Region A: Residues: [1-213] |
1 11 21 31 41 51
| | | | | |
1 MSENNGNPLD LSSLRNKISS KLRDNNSKKA KKTHKGKDVK ASSNSKKVNE DIRREALALG 60
61 ASEEDLKLIQ GLSDDDDAKS EQEFDAVADE DADDKGFKND LQNFMKNVGF DQHKLEDVDD 120
121 DDIEEESTSS KESKIPAQEK EHAQSNIASS TIEKTSQESI DNGSEQEENT VEEANLSSDQ 180
181 EPESESAEKE KKEEKDGGLI TQTTIISSDK LII
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [214-922] |
1 11 21 31 41 51
| | | | | |
1 PYDKPWYEIP LDPQVGQNDD VEELSKEQIE KLFERGKQTL EADNQTYYEE FTKDSSQAKF 60
61 MSQILSDGTL NDKISAVTLL IQDSPLHNTK SLETLVSYCG KKSRNSALQS LNALKDLFLN 120
121 GLLPNRKLRY FKNQPGLSMM LNKKTLAIFY FEDYLKKLFF RVLEVLEVLS HDPIIHVRLQ 180
181 ILNHVFDLLT NQPEQEFNLL RLGVNKIGDI DSKVSSKASY LLLKLEQAHP NMKSIVIDAI 240
241 VDIALRPNAD YHTTYYSVIT LNQTILKRSE DSVANKLVKT YFTLFEKFLI NTDKDNTNGV 300
301 VKSNSKSYEE KRKKNFKKGK HGGKSVKIEK TENEVLDEKN SKLFSALLTG INRAFPFAQI 360
361 PASVYEVHME TLFKITHSSN FNTSIQALVL INQVTVKAKL NSDRYYRTLY ESLFDPRLVN 420
421 SSKQGIYLNL LYKSLKQDAL NVERVEAFVK RILQVCSHWL NVGTITGFFF LLIQLAKTVP 480
481 QIKNLLTNTP VDYEYESDAE EEQGDKDIKR KEYDGRKRDP KFANAEKSSL WEINNFINHF 540
541 HPTVKTYANA YVTGETEQIA KPDLGLFTLS HFLDRFVYRS AKQTNTARGT SIMQPLFSGS 600
601 RVNDSVLVKA SDIMHDQGPV NTEDWLTKKV EDIKPEDKFF YQYFTTKKTA DGKGKKSNKA 660
661 SNFDSDDEMD ENEIWSALVK SRPDVEDDSD DSELDFAEDD FSDSTSDDE
|
| Detection Method: | |
| Confidence: | 1000.0 |
| Match: | PF03914 |
| Description: | CBF/Mak21 family |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.81296846555705 | bayes_pls_golite062009 |
| RNA binding | 2.62914297393378 | bayes_pls_golite062009 |
| structural molecule activity | 2.41912877876968 | bayes_pls_golite062009 |
| protein binding | 1.81870125631028 | bayes_pls_golite062009 |
| mRNA binding | 0.868658457661827 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.19418057335311 | bayes_pls_golite062009 |
| nucleic acid binding | 0.118461769548431 | bayes_pls_golite062009 |
|
Region A: Residues: [923-1025] |
1 11 21 31 41 51
| | | | | |
1 PKLDAIDDED AKSEGSQESD QEEGLDEDIF YSFDGEQDNS DKKRSFAESS EEDESSEEEK 60
61 EEEENKEVSA KRAKKKQRKN MLKSLPVFAS ADDYAQYLDQ DSD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.532 | a.118.1 | ARM repeat |
| View | Download | 0.509 | a.29.2 | Bromodomain |
| View | Download | 0.499 | a.24.4 | Hemerythrin |
| View | Download | 0.536 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.497 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.441 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.397 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.387 | a.7.1 | Spectrin repeat |
| View | Download | 0.369 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.353 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.348 | d.15.4 | 2Fe-2S ferredoxin-like |
| View | Download | 0.326 | a.24.3 | Cytochromes |
| View | Download | 0.324 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.318 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.311 | a.64.1 | Saposin |
| View | Download | 0.304 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.293 | a.3.1 | Cytochrome c |
| View | Download | 0.266 | a.126.1 | Serum albumin-like |
| View | Download | 0.261 | a.26.1 | 4-helical cytokines |
| View | Download | 0.252 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.244 | a.24.11 | Bacterial GAP domain |
| View | Download | 0.233 | a.130.1 | Chorismate mutase II |
| View | Download | 0.227 | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.217 | a.118.8 | TPR-like |
| View | Download | 0.215 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.214 | a.4.1 | Homeodomain-like |
| View | Download | 0.211 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.207 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.206 | a.1.1 | Globin-like |
| View | Download | 0.203 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.202 | a.91.1 | Regulator of G-protein signalling, RGS |
