YRC Public Data Repository - Protein Structure Prediction

Protein:	RSM10
Organism:	Saccharomyces cerevisiae
Length:	203 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSM10.

Description	E-value	Query Range	Subject Range
gi\|151942032 - gi\|151942032\|gb\|EDN60388.1\| mitochondrial ribosomal small subunit component [Saccharomyces cerevisia... RT10_YEAST - 37S ribosomal protein S10, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|190404988 - gi\|190404988\|gb\|EDV08255.1\| 30S ribosomal protein S10, mitochondrial precursor [Saccharomyces cerevi... RSM10 - Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S10 ribosomal protei...	2.0E-67	[1..203]	[1..203]
mRpS10-PA - The gene mitochondrial ribosomal protein S10 is referred to in FlyBase by the symbol Dmel\mRpS10 (CG... gi\|220949008, gi... - gi\|220958176\|gb\|ACL91631.1\| mRpS10-PA [synthetic construct], gi\|220949008\|gb\|ACL87047.1\| mRpS10-PA [...	4.0E-33	[2..149]	[8..153]
CE20222 - status:Partially_confirmed UniProt:Q9XWV5 protein_id:CAA21535.1	3.0E-32	[1..155]	[1..156]
RS10_SINMW - 30S ribosomal protein S10 OS=Sinorhizobium medicae (strain WSM419) GN=rpsJ PE=3 SV=1 RS10_RHISN - 30S ribosomal protein S10 OS=Rhizobium sp. (strain NGR234) GN=rpsJ PE=3 SV=1 RS10_RHIME - 30S ribosomal protein S10 OS=Rhizobium meliloti GN=rpsJ PE=3 SV=1 RS10_RHIME - 30S ribosomal protein S10 OS=Rhizobium meliloti (strain 1021) GN=rpsJ PE=3 SV=1	3.0E-31	[41..142]	[4..102]
RS10_RHILO - 30S ribosomal protein S10 OS=Rhizobium loti (strain MAFF303099) GN=rpsJ PE=3 SV=1 RS10_RHILO - 30S ribosomal protein S10 OS=Rhizobium loti GN=rpsJ PE=3 SV=1	3.0E-31	[41..142]	[4..102]
gi\|25294651 - gi\|25294651\|pir\|\|AI2815 30S ribosomal protein S10 [imported] - Agrobacterium tumefaciens (strain C58... RS10_AGRFC - 30S ribosomal protein S10 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rpsJ PE=3 SV=1	4.0E-31	[41..142]	[4..102]
gi\|1075260 - gi\|1075260\|pir\|\|D64092 ribosomal protein S10 - Haemophilus influenzae (strain Rd KW20) gi\|46133133 - gi\|46133133\|ref\|ZP_00156632.2\| COG0051: Ribosomal protein S10 [Haemophilus influenzae R2866] gi\|48868599 - ref\|ZP_00321912.1\| COG0051: Ribosomal protein S10 [Haemophilus influenzae 86-028NP] gi\|1573786, gi\|1... - gi\|16272717\|ref\|NP_438935.1\| 30S ribosomal protein S10 [Haemophilus influenzae Rd KW20], gi\|1573786\|...	4.0E-31	[41..142]	[19..117]
RS10_SPIPL - (P48852) 30S ribosomal protein S10 gi\|209527552, gi... - gi\|209527552\|ref\|ZP_03276054.1\| ribosomal protein S10 [Arthrospira maxima CS-328], gi\|209492040\|gb\|E... RS10_ARTPT - 30S ribosomal protein S10 OS=Arthrospira platensis GN=rpsJ PE=3 SV=1	9.0E-31	[39..142]	[5..105]
RS10_RALSO - 30S ribosomal protein S10 OS=Ralstonia solanacearum (strain GMI1000) GN=rpsJ PE=3 SV=1 gi\|83748148, gi\|... - gi\|83748148\|ref\|ZP_00945175.1\| SSU ribosomal protein S10P [Ralstonia solanacearum UW551], gi\|8372511... RS10_RALSO - 30S ribosomal protein S10 OS=Ralstonia solanacearum GN=rpsJ PE=3 SV=1	9.0E-31	[38..142]	[2..103]
RS10_BRUA2 - 30S ribosomal protein S10 OS=Brucella abortus (strain 2308) GN=rpsJ PE=3 SV=1 RS10_BRUAB - 30S ribosomal protein S10 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpsJ PE=3 SV=1 RS10_OCHA4 - 30S ribosomal protein S10 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rp... RS10_BRUAB - 30S ribosomal protein S10 OS=Brucella abortus GN=rpsJ PE=3 SV=1 RS10_BRUO2 - 30S ribosomal protein S10 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rpsJ PE=3 SV... RS10_BRUA1 - 30S ribosomal protein S10 OS=Brucella abortus (strain S19) GN=rpsJ PE=3 SV=1 RS10_BRUMB - 30S ribosomal protein S10 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpsJ PE=3 SV=1 gi\|237815653, gi... - gi\|237815653\|ref\|ZP_04594650.1\| ribosomal protein S10 [Brucella abortus str. 2308 A], gi\|237788951\|g... gi\|225617709, gi... - gi\|225627704\|ref\|ZP_03785741.1\| ribosomal protein S10 [Brucella ceti str. Cudo], gi\|225617709\|gb\|EEH... RS10_BRUSU - 30S ribosomal protein S10 OS=Brucella suis GN=rpsJ PE=3 SV=1 gi\|254693939 - gi\|254693939\|ref\|ZP_05155767.1\| 30S ribosomal protein S10 [Brucella abortus bv. 3 str. Tulya] gi\|254697589 - gi\|254697589\|ref\|ZP_05159417.1\| 30S ribosomal protein S10 [Brucella abortus bv. 2 str. 86/8/59] gi\|239824390, gi... - gi\|239832123\|ref\|ZP_04680452.1\| ribosomal protein S10 [Ochrobactrum intermedium LMG 3301], gi\|239824... gi\|254689454 - gi\|254689454\|ref\|ZP_05152708.1\| 30S ribosomal protein S10 [Brucella abortus bv. 6 str. 870] gi\|254706585 - gi\|254706585\|ref\|ZP_05168413.1\| 30S ribosomal protein S10 [Brucella pinnipedialis M163/99/10] gi\|254710305 - gi\|254710305\|ref\|ZP_05172116.1\| 30S ribosomal protein S10 [Brucella pinnipedialis B2/94] RS10_BRUSI - 30S ribosomal protein S10 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rpsJ PE=3 SV=1 gi\|254701975 - gi\|254701975\|ref\|ZP_05163803.1\| 30S ribosomal protein S10 [Brucella suis bv. 5 str. 513] RS10_BRUME - 30S ribosomal protein S10 OS=Brucella melitensis GN=rpsJ PE=3 SV=1 RS10_BRUC2 - 30S ribosomal protein S10 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpsJ PE=3 SV=1 gi\|254704519 - gi\|254704519\|ref\|ZP_05166347.1\| 30S ribosomal protein S10 [Brucella suis bv. 3 str. 686] RS10_BRUSU - 30S ribosomal protein S10 OS=Brucella suis biovar 1 (strain 1330) GN=rpsJ PE=3 SV=1 gi\|254730483 - gi\|254730483\|ref\|ZP_05189061.1\| 30S ribosomal protein S10 [Brucella abortus bv. 4 str. 292] RS10_BRUME - 30S ribosomal protein S10 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN... gi\|254714302 - gi\|254714302\|ref\|ZP_05176113.1\| 30S ribosomal protein S10 [Brucella ceti M644/93/1] gi\|254717739 - gi\|254717739\|ref\|ZP_05179550.1\| 30S ribosomal protein S10 [Brucella ceti M13/05/1]	2.0E-30	[41..142]	[4..102]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRNTIALRS FIRTQSTRPY PVNVEAVYYA PLKLPIKYGD LVADIQLRSY DNENLDFYSD  60
   61 FILRTGYYLG IPLTGPKPLP TRRERWTVIK SPFVHAKSKE NFERHTHKRL IRAWDTNPEV 120
  121 LQMLIAYITK HSMAGVGMKC NFFQRSEISL DLGSDANGLE KSLSNIDELY SLRNDDKAQT 180
  181 SAVGQKVLEL LDSPDFKKHL EKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	141.502279
Match:	1fjgJ_
Description:	Ribosomal protein S10
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.82905885280588	bayes_pls_golite062009
structural molecule activity	9.25405593567362	bayes_pls_golite062009
binding	1.24015405788732	bayes_pls_golite062009
protein binding	0.61905694475273	bayes_pls_golite062009
RNA binding	0.60427462690745	bayes_pls_golite062009
nucleic acid binding	0.593237783262061	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: