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View Structure Prediction Details

Protein: YDR034C-C
Organism: Saccharomyces cerevisiae
Length: 438 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR034C-C.

Description E-value Query
Range
Subject
Range
YGR161C-D - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YG13B_YEAST - Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
555.0 [0..1] [431..1]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQNS PNLHGSAYAS VTSKEVPSNQ DPLAVSASNL PEFDRDSTKV NSQQETTPGT  60
   61 SAVPENHHHV SPQPASVPPP QNGQYQQHGM MTPNKAMASN WAHYQQPSMM TCSHYQTSPA 120
  121 YYQPDPHYPL PQYIPPLSTS SPDPIDLKNQ HSEIPQAKTK VGNNVLPPHT LTSEE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 77.21467
Match: PF01021.9
Description: No description for PF01021.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.259 N/A N/A d.122.1 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
View Download 0.249 N/A N/A c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.240 N/A N/A c.46.1 Rhodanese/Cell cycle control phosphatase
View Download 0.213 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.210 N/A N/A a.121.1 Tetracyclin repressor-like, C-terminal domain

Predicted Domain #2
Region A:
Residues: [176-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFSTWVKFYI RFLKNSNLGD IIPNDQGEIK RQMTYEEHAY IYNTFQAFAP FHLLPTWVKQ  60
   61 ILEINYADIL TVLCKSVSKM QTNNQELKDW IALANLEYDG 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.718 a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.683 a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.683 a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.636 a.204.1 Description not found.
View Download 0.613 a.152.1 Antioxidant defence protein AhpD
View Download 0.609 a.7.6 Ribosomal protein S20
View Download 0.542 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.530 a.39.2 Insect pheromon/odorant-binding proteins
View Download 0.525 a.24.3 Cytochromes
View Download 0.483 a.118.13 Arp2/3 complex 16 kDa subunit ARPC5

Predicted Domain #3
Region A:
Residues: [276-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STSADTFEIT VSTIIQRLKE NNINVSDRLA CQLILKGLSG DFKYLRNQYR TKTNMKLSQL  60
   61 FAEIQLIYDE NKIMNLNKPS QYKQHSEYKN VSRTSPNTTN TKVTTRNYQR TNSSKPRAAK 120
  121 AHNIATSSKF SRVNNDHINE STVSSQYLSD DNELSLRPAT ERI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.730 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.716 N/A N/A a.26.1 4-helical cytokines
View Download 0.716 N/A N/A a.26.1 4-helical cytokines
View Download 0.570 N/A N/A a.26.1 4-helical cytokines
View Download 0.570 N/A N/A a.26.1 4-helical cytokines
View Download 0.484 N/A N/A a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.484 N/A N/A a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.431 N/A N/A c.23.14 Nucleoside 2-deoxyribosyltransferase
View Download 0.337 N/A N/A d.41.2 Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
View Download 0.320 N/A N/A a.73.1 Retrovirus capsid protein, N-terminal core domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle