YRC Public Data Repository - Protein Structure Prediction

Protein:	DAD1
Organism:	Saccharomyces cerevisiae
Length:	94 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAD1.

Description	E-value	Query Range	Subject Range
dad1 - DASH complex subunit Dad1 DAD1_SCHPO - DASH complex subunit dad1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dad1 PE=1 SV=1	101.0	[0..7]	[83..9]
DAD1_ASHGO - DASH complex subunit DAD1 OS=Ashbya gossypii GN=DAD1 PE=3 SV=1 DAD1_ASHGO - DASH complex subunit DAD1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-10...	87.0	[0..1]	[73..1]
DAD1_KLULA - DASH complex subunit DAD1 OS=Kluyveromyces lactis GN=DAD1 PE=3 SV=1 DAD1_KLULA - DASH complex subunit DAD1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 12...	79.0	[0..8]	[75..3]
gi\|42545872, gi\|... - gi\|46105394\|ref\|XP_380501.1\| hypothetical protein FG00325.1 [Gibberella zeae PH-1], gi\|42545872\|gb\|E...	79.0	[0..2]	[71..1]
gi\|18376377, gi\|... - gi\|32404100\|ref\|XP_322663.1\| predicted protein [Neurospora crassa], gi\|28917931\|gb\|EAA27616.1\| predi... gi\|85082116 - gi\|85082116\|ref\|XP_956852.1\| hypothetical protein NCU03405 [Neurospora crassa OR74A]	78.0	[0..19]	[71..20]
gi\|114192175, gi... - gi\|115399406\|ref\|XP_001215292.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114192175\|gb\|EA...	71.0	[0..11]	[81..8]
gi\|88179386, gi\|... - gi\|88179386\|gb\|EAQ86854.1\| hypothetical protein CHGG_08107 [Chaetomium globosum CBS 148.51], gi\|1161...	67.0	[0..19]	[80..19]
gi\|119191756, gi... - gi\|90305270\|gb\|EAS34901.1\| predicted protein [Coccidioides immitis RS], gi\|119191756\|ref\|XP_00124648...	66.0	[0..19]	[71..12]
gi\|83773045 - gi\|83773045\|dbj\|BAE63173.1\| unnamed protein product [Aspergillus oryzae] gi\|169779683 - gi\|169779683\|ref\|XP_001824306.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238500355, gi... - gi\|238500355\|ref\|XP_002381412.1\| DASH complex subunit DAD1, putative [Aspergillus flavus NRRL3357], ...	64.0	[0..10]	[71..7]
DAD1_DEBHA - DASH complex subunit DAD1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 00... DAD1_DEBHA - DASH complex subunit DAD1 OS=Debaryomyces hansenii GN=DAD1 PE=3 SV=1	62.0	[0..13]	[84..1]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMASTSNDEE KLISTTDKYF IEQRNIVLQE INETMNSILN GLNGLNISLE SSIAVGREFQ  60
   61 SVSDLWKTLY DGLESLSDEA PIDEQPTLSQ SKTK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.040959
Match:	PF08649.1
Description:	No description for PF08649.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.935	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.935	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.930	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.914	N/A	N/A	a.2.15	Description not found.
View	Download	0.893	N/A	N/A	a.186.1	Description not found.
View	Download	0.880	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.865	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.831	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.815	N/A	N/A	a.7.6	Ribosomal protein S20
View	Download	0.808	N/A	N/A	a.159.4	Description not found.
View	Download	0.793	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.761	N/A	N/A	a.159.4	Description not found.
View	Download	0.752	N/A	N/A	a.159.4	Description not found.
View	Download	0.653	N/A	N/A	a.159.4	Description not found.
View	Download	0.652	N/A	N/A	a.159.4	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits