| Protein: | RPL4B |
| Organism: | Saccharomyces cerevisiae |
| Length: | 362 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL4B.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..355] | [3..357] |
|
|
0.0 | [2..350] | [4..351] |
|
|
0.0 | [1..350] | [3..352] |
|
|
0.0 | [2..350] | [4..353] |
|
|
0.0 | [2..349] | [4..352] |
|
|
0.0 | [2..348] | [4..351] |
|
Region A: Residues: [1-49] |
1 11 21 31 41 51
| | | | | |
1 MSRPQVTVHS LTGEATANAL PLPAVFSAPI RPDIVHTVFT SVNKNKRQA
|
|
Region B: Residues: [106-300] |
1 11 21 31 41 51
| | | | | |
1 WRKWNVKVNH NEKRYATASA IAATAVASLV LARGHRVEKI PEIPLVVSTD LESIQKTKEA 60
61 VAALKAVGAH SDLLKVLKSK KLRAGKGKYR NRRWTQRRGP LVVYAEDNGI VKALRNVPGV 120
121 ETANVASLNL LQLAPGAHLG RFVIWTEAAF TKLDQVWGSE TVASSKVGYT LPSHIISTSD 180
181 VTRIINSSEI QSAIR
|
| Detection Method: |  |
| Confidence: | 1231.045757 |
| Match: | 1k5yD_ |
| Description: | No description for 1k5yD_ was found. |
|
Region A: Residues: [50-105] |
1 11 21 31 41 51
| | | | | |
1 YAVSEKAGHQ TSAESWGTGR AVARIPRVGG GGTGRSGQGA FGNMCRGGRM FAPTKT
|
| Detection Method: | |
| Confidence: | 1231.045757 |
| Match: | 1k5yD_ |
| Description: | No description for 1k5yD_ was found. |
|
Region A: Residues: [301-362] |
1 11 21 31 41 51
| | | | | |
1 PAGQATQKRT HVLKKNPLKN KQVLLRLNPY AKVFAAEKLG SKKAEKTGTK PAAVFAETLK 60
61 HD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.611 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.354 | N/A | N/A | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.339 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.297 | N/A | N/A | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.339 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.285 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.271 | N/A | N/A | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.230 | N/A | N/A | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.225 | N/A | N/A | g.58.1 | Pheromone ER-23 |
| View | Download | 0.214 | N/A | N/A | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.207 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
