| Protein: | SOK1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 901 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SOK1.
| Description | E-value | Query Range |
Subject Range |
|
|
924.0 | [0..337] | [901..1] |
|
|
661.0 | [0..34] | [901..103] |
|
|
610.0 | [0..119] | [898..265] |
|
|
600.0 | [0..1] | [898..1] |
|
|
450.0 | [0..321] | [685..2] |
|
|
449.0 | [0..321] | [685..2] |
|
|
449.0 | [0..321] | [685..2] |
|
Region A: Residues: [1-347] |
1 11 21 31 41 51
| | | | | |
1 MDQPRTHSGP TTASNPAPSS TNSSSAPSAT NSKQERSSSS LSKPSSVVPS KDSPDGDAIA 60
61 KTQAAALKND MKSGDTSTLD GSSQNIIPNR ASMQKYIDQS SDLLSRSSGV ITPSMSLNAS 120
121 TNATNNDSSG NSANSSDLKI PIDRDNTIFK TFDTKTGQFL KNDDNEEEIR RNNKVDSIPP 180
181 KNIYTNINNP SPSPPPSSKQ PPSASAPQLP PATEPHKEQA AQQQPPGNAS NFLRIFSNKK 240
241 MRSHSVPTIL HSSLRKLSSH NQYYRNQNIL LNHPTPSGIS KKKFSRNHHQ PYLHSNNPLS 300
301 SNPLSLKRAI FLNQQISGNA STNANNDNIN NSTATSMTNQ SFLSSSN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [348-716] |
1 11 21 31 41 51
| | | | | |
1 FDLTLEDRIN YIKATPTPVP FPPINLQGLK EIDLQEILKN PQLRHDIIFD PLLQFRPNLD 60
61 GERGNKKRQL ANIYWNDVQN EIYVYSKRPE IFQYNRSRLV PLFDTLRDVL LTIVPQKESP 120
121 MINNVLDTEL NIQELLKGSL IMSNLSGWLA DLFKHHCAPM RDPWVDKMSN KFKEAERDSS 180
181 LTRLIEGLRL VFQILETMKL DIANHQIRIL RPALLSNAVE FEKQYFNTLI ASKRVNLNTS 240
241 LLWFDKKFNE NVTAGLVRNP SSITIPDVYN ICIRSIINLL SCRKMVREYP TPLSFDHARL 300
301 ILLRADIRQI VCILVCRLLF QQLVANDPSM DKATKEYVIH TYSTKRLKNE IISIITDEHG 360
361 NCRWTKNTM
|
| Detection Method: | |
| Confidence: | 9.18 |
| Match: | |
| Description: | No description for 1ldjA was found. |
|
Region A: Residues: [717-812] |
1 11 21 31 41 51
| | | | | |
1 SIAVHLCKVI DDLHREYDNN GSCEQARRPQ LPSLDNSKIT FAKSWLSKQT QPLSEVYGVL 60
61 ENRVFKSLED AIFNRSECTI DGRVKQDFVY LYNTNN
|
| Detection Method: | |
| Confidence: | 9.18 |
| Match: | |
| Description: | No description for 1ldjA was found. |
|
Region A: Residues: [813-901] |
1 11 21 31 41 51
| | | | | |
1 GNVGSTNTLS TTTDTASVKI SPSLMSPSKT STTTPTGNAI ASRGLFAATE LEEFENVYRH 60
61 LYALINLHWS VFGPHYIEML GDKVNKKGI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.928 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
