YRC Public Data Repository - Protein Structure Prediction

Protein:	YPD1
Organism:	Saccharomyces cerevisiae
Length:	167 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPD1.

Description	E-value	Query Range	Subject Range
gi\|6980545, gi\|6... - gi\|6980548\|pdb\|1C03\|D Chain D, Crystal Structure Of Ypd1p (Triclinic Form), gi\|6980547\|pdb\|1C03\|C Ch...	1.0E-54	[1..167]	[1..167]
gi\|9886962 - gi\|9886962\|gb\|AAG01679.1\|AF213247_1 Ypd1 [Candida albicans] YPD1_CANAL - Phosphorelay intermediate protein YPD1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YPD1 P... gi\|238878842 - gi\|238878842\|gb\|EEQ42480.1\| conserved hypothetical protein [Candida albicans WO-1]	5.0E-43	[3..163]	[9..183]
gi\|4156243 - gi\|4156243\|dbj\|BAA37111.1\| ATHP2 [Arabidopsis thaliana]	9.0E-29	[1..92]	[14..107]
gi\|13774348 - gi\|13774348\|gb\|AAK38843.1\|AF346308_1 histidine-containing phosphotransfer protein [Catharanthus rose...	5.0E-27	[2..90]	[16..105]

Back

Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTIPSEIIN WTILNEIISM DDDDSDFSKG LIIQFIDQAQ TTFAQMQRQL DGEKNLTELD  60
   61 NLGHFLKGSS AALGLQRIAW VCERIQNLGR KMEHFFPNKT ELVNTLSDKS IINGINIDED 120
  121 DEEIKIQVDD KDENSIYLIL IAKALNQSRL EFKLARIELS KYYNTNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	816.27013
Match:	1c03A_
Description:	Phosphorelay protein ypd1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.3654310752095	bayes_pls_golite062009
protein binding	0.605533885569173	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: