YRC Public Data Repository - Protein Structure Prediction

Protein:	BRE4
Organism:	Saccharomyces cerevisiae
Length:	1125 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BRE4.

Description	E-value	Query Range	Subject Range
gi\|49524715 - gi\|49524715\|emb\|CAG58317.1\| unnamed protein product [Candida glabrata] gi\|49524715, gi\|... - gi\|50285965\|ref\|XP_445411.1\| unnamed protein product [Candida glabrata], gi\|49524715\|emb\|CAG58317.1\|...	1232.0	[0..21]	[1123..25]
gi\|49643044 - gi\|49643044\|emb\|CAH01006.1\| KLLA0D19118p [Kluyveromyces lactis] gi\|50307833, gi\|... - gi\|50307833\|ref\|XP_453910.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643044\|emb\|CAH0100...	960.0	[0..17]	[1123..4]
BRE4_ASHGO - Protein BRE4 OS=Ashbya gossypii GN=BRE4 PE=3 SV=1 BRE4_ASHGO - Protein BRE4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BRE4 P...	801.0	[0..15]	[1123..2]
gi\|50557328, gi\|... - gi\|50557328\|ref\|XP_506072.1\| YALI0F30921p [Yarrowia lipolytica], gi\|49651942\|emb\|CAG78885.1\| unnamed... gi\|49651942 - gi\|49651942\|emb\|CAG78885.1\| YALI0F30921p [Yarrowia lipolytica]	499.0	[0..6]	[1123..159]
YDG8_SCHPO - Uncharacterized protein C26F1.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26F1... SPAC26F1.08c - conserved protein	282.0	[0..147]	[326..27]
gi\|46135989, gi\|... - gi\|46135989\|ref\|XP_389686.1\| hypothetical protein FG09510.1 [Gibberella zeae PH-1], gi\|42553456\|gb\|E...	185.0	[0..686]	[1123..606]
gi\|46097076, gi\|... - gi\|71006100\|ref\|XP_757716.1\| hypothetical protein UM01569.1 [Ustilago maydis 521], ref\|XP_399184.1\| ...	85.0	[0..680]	[1040..991]
gi\|42557542 - gi\|42557542\|emb\|CAE84444.1\| putative Bre4 protein [Nakaseomyces delphensis]	76.0	[0..37]	[107..70]
gi\|50256931, gi\|... - gi\|50256931\|gb\|EAL19649.1\| hypothetical protein CNBG2770 [Cryptococcus neoformans var. neoformans B-...	68.0	[0..808]	[1033..948]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRYERDRSP TPDPDIVKGS YSQTSLRSLH ELNYKNPAGI SGLSFAGSPQ QSVASLSQMR  60
   61 LENLVKDKHW EEVEDFGLEE LRDGFFDAAF TKPDSKARSP NSD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [104-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDDDNGAARK KLQSGFTKLS EYVWTAIYRP IIHFPRDIRK NGVSIFKFFI AYFIAIVICV  60
   61 IRPSGRWIGH EFRYFLPIAV LIHHPVRNIG VQLEMTISSI IGASFGLGWS ALAWYISTAT 120
  121 KPTANYQGGI LFQSLTMALL FAIWLRSVYR RFFYFTTSFS ISIIFTHTVR LASSKFDLKW 180
  181 QIFWDFGISY LFGLLLSLLV CVCVSPHSGN AELMEHYNKC LQTTKTFLMA LVDTELIK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [342-1125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKEQIYLAQV KMVKTLNIDL SQGFRDFVNQ LTISRFDLQS LKSLRNSLTA METSLRVLPI  60
   61 APKIFNDDEL KKMYEELEKY RSDSATLSKE ASASPQSSGI PTRENTPSAF KPIGPGLLKN 120
  121 EIYINALKAS FSKSIFNLIL EMIFVLENLS RVLKKYESPN QKNNLDECVK ILSHSHSKLK 180
  181 RKIYKLDVCY RDFVNSSFFS QELLNDEESV DIFLFLRYLR NSARQLVTVI HDCQVLGENI 240
  241 HWRIALPSYP LSRALTRLPK QCVLDEGAGN VLHYFEAKRD VDEIFERVYN TYTSRHKYNK 300
  301 GEEEALRLDS QGGDEKSQNR KNHTISIRAI DHNDFNFHTT QNPWRFKLWK LSRILSGDEC 360
  361 KWTLKITFCM IFLCLPTWLP ESYHWYQEFH CWWAPLTFYL LAHRRYSGNW ALVMRRLICG 420
  421 IVGIFWGWAA NQSRHFGSPY VVCTFAGLIV VPFSINFLVY RNTKSSFTAL MCFTIIALEP 480
  481 YSKPNRHYNL TTAGIWKSTW VTGLALIIGI LVSIPINWIV WPFRARTELR DSMSSLLAHL 540
  541 GQSYQTVADR YLYRDADDAP TDLTFAFSHI REVRLTQSLE AIRELLKKAR HEPIIISNFN 600
  601 PEKYASLINS CQFLLSKIIE ARISGAFFEI WDQDFDIETT RALLSLRRDS VSSVIFVFYI 660
  661 LSNCFRSKNK IPRYLPNPIM SRKKLYHFIK KFSEMKDQSH SNLNSGGNSM EKNLFKKIYQ 720
  721 QKASSSGQQQ LPLPSVANSS EIDSEKMHWT EVHGIAFARA FTDISEALFQ VESCAKDILG 780
  781 EENF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits