| Protein: | GCS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 352 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCS1.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..352] | [1..352] |
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4.0E-80 | [8..352] | [4..332] |
|
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3.0E-78 | [12..351] | [5..394] |
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1.0E-75 | [8..352] | [4..332] |
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2.0E-75 | [8..352] | [4..332] |
|
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3.0E-73 | [8..350] | [4..352] |
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6.0E-57 | [1..284] | [1..283] |
|
Region A: Residues: [1-201] |
1 11 21 31 41 51
| | | | | |
1 MSDWKVDPDT RRRLLQLQKI GANKKCMDCG APNPQWATPK FGAFICLECA GIHRGLGVHI 60
61 SFVRSITMDQ FKPEELLRME KGGNEPLTEW FKSHNIDLSL PQKVKYDNPV AEDYKEKLTC 120
121 LCEDRVFEER EHLDFDASKL SATSQTAASA TPGVAQSREG TPLENRRSAT PANSSNGANF 180
181 QKEKNEAYFA ELGKKNQSRP D
|
| Detection Method: |  |
| Confidence: | 187.221849 |
| Match: | 1dcqA_ |
| Description: | Pyk2-associated protein beta; Pyk2-associated protein beta ARF-GAP domain |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [202-254] |
1 11 21 31 41 51
| | | | | |
1 HLPPSQGGKY QGFGSTPAKP PQERSAGSSN TLSLENFQAD PLGTLSRGWG LFS
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.233 | a.4.1 | Homeodomain-like |
| View | Download | 0.268 | a.155.1 | H-NS histone-like proteins |
| View | Download | 0.229 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.310 | a.159.2 | FF domain |
| View | Download | 0.310 | a.159.2 | FF domain |
| View | Download | 0.268 | a.155.1 | H-NS histone-like proteins |
| View | Download | 0.233 | a.4.1 | Homeodomain-like |
| View | Download | 0.229 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
|
Region A: Residues: [255-352] |
1 11 21 31 41 51
| | | | | |
1 SAVTKSFEDV NETVIKPHVQ QWQSGELSEE TKRAAAQFGQ KFQETSSYGF QAFSNFTKNF 60
61 NGNAEDSSTA GNTTHTEYQK IDNNDKKNEQ DEDKWDDF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.652 | 0.466 | ER to Golgi vesicle-mediated transport | a.118.8 | TPR-like |
| View | Download | 0.563 | 0.101 | retrograde vesicle-mediated transport, Golgi to ER | a.118.1 | ARM repeat |
| View | Download | 0.524 | 0.033 | retrograde vesicle-mediated transport, Golgi to ER | a.118.9 | ENTH/VHS domain |
| View | Download | 0.564 | 0.023 | retrograde vesicle-mediated transport, Golgi to ER | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.742 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.742 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.652 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.564 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.563 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.524 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.510 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.414 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.406 | N/A | N/A | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.383 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.377 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.369 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.364 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.363 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.353 | N/A | N/A | a.23.3 | Methane monooxygenase hydrolase, gamma subunit |
| View | Download | 0.353 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.337 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.330 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.327 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.324 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.312 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.312 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.308 | N/A | N/A | a.24.11 | Bacterial GAP domain |
| View | Download | 0.291 | N/A | N/A | c.114.1 | YchN-like |
| View | Download | 0.266 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.266 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.264 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.256 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.251 | N/A | N/A | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.234 | N/A | N/A | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.221 | N/A | N/A | a.49.1 | C-terminal domain of B transposition protein |
| View | Download | 0.220 | N/A | N/A | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.216 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.215 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.211 | N/A | N/A | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.208 | N/A | N/A | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
