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View Structure Prediction Details

Protein: SHS1
Organism: Saccharomyces cerevisiae
Length: 551 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHS1.

Description E-value Query
Range
Subject
Range
SHS1_YEAST - Seventh homolog of septin 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHS1 PE=1 SV...
SHS1 - One of five related septins (Cdc3p, Cdc10p, Cdc11p, Cdc12p, Shs1p) that form a cortical filamentous ...
0.0 [1..551] [1..551]
gi|2978511 - gi|2978511|gb|AAC39780.1| septin [Homo sapiens]
0.0 [6..391] [77..417]
SEPT4_MOUSE - Septin-4 OS=Mus musculus GN=Sept4 PE=1 SV=1
0.0 [6..392] [129..478]
gi|220955920, gi... - gi|220955920|gb|ACL90503.1| pnut-PA [synthetic construct], gi|220946224|gb|ACL85655.1| pnut-PA [synt...
pnut-PA, pnut-PB - The gene peanut is referred to in FlyBase by the symbol Dmel\pnut (CG8705, FBgn0013726). It is a pro...
7.0E-95 [6..416] [127..484]

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Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTASTPPIN LFRRKKEHKR GITYTMLLCG PAGTGKTAFA NNLLETKIFP HKYQYGKSNA  60
   61 SISSNPEVKV IAPTKVVSFN SKNGIPSYVS EFDPMRANLE PGITITSTSL ELGGNKDQGK 120
  121 PEMNEDDTVF FNLIMTHGIG ENLDDSLCSE EVMSYLEQQF DIVLAEETRI KRNPRFEDTR 180
  181 VHVALYFIEP TGHGLREVDV ELMKSISKYT NVLPIITRAD SFT

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.94
Match: 1h65A
Description: Chloroplast protein translocon GTPase Toc34
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [224-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEELTQFRKN IMFDVERYNV PIYKFEVDPE DDDLESMEEN QALASLQPFA IITSDTRDSE  60
   61 GRYVREYPWG IISIDDDKIS DLKVLKNVLF GSHLQEFKDT TQNLLYENYR SEKLSSVANA 120
  121 EEIGPNSTKR QSNAPSLSNF ASLISTGQFN SSQTLANNLR ADTPRNQVSG NFKENEYEDN 180
  181 GEHDSAENEQ EMSPVRQLGR EIKQENENLI RSIKTESSPK FLNSPDLPER TKLRNISETV 240
  241 PYVLRHERIL ARQQKLEELE AQSAKELQKR IQELERKAHE LKLREKLINQ NKLNGSSSSI 300
  301 NSLQQSTRSQ IKKNDTYTDL ASIASGRD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 1i84S_
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle