| Protein: | SHS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 551 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..551] | [1..551] |
|
|
0.0 | [6..391] | [77..417] |
|
|
0.0 | [6..392] | [129..478] |
|
|
7.0E-95 | [6..416] | [127..484] |
|
Region A: Residues: [1-223] |
1 11 21 31 41 51
| | | | | |
1 MSTASTPPIN LFRRKKEHKR GITYTMLLCG PAGTGKTAFA NNLLETKIFP HKYQYGKSNA 60
61 SISSNPEVKV IAPTKVVSFN SKNGIPSYVS EFDPMRANLE PGITITSTSL ELGGNKDQGK 120
121 PEMNEDDTVF FNLIMTHGIG ENLDDSLCSE EVMSYLEQQF DIVLAEETRI KRNPRFEDTR 180
181 VHVALYFIEP TGHGLREVDV ELMKSISKYT NVLPIITRAD SFT
|
| Detection Method: |  |
| Confidence: | 7.94 |
| Match: | 1h65A |
| Description: | Chloroplast protein translocon GTPase Toc34 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [224-551] |
1 11 21 31 41 51
| | | | | |
1 KEELTQFRKN IMFDVERYNV PIYKFEVDPE DDDLESMEEN QALASLQPFA IITSDTRDSE 60
61 GRYVREYPWG IISIDDDKIS DLKVLKNVLF GSHLQEFKDT TQNLLYENYR SEKLSSVANA 120
121 EEIGPNSTKR QSNAPSLSNF ASLISTGQFN SSQTLANNLR ADTPRNQVSG NFKENEYEDN 180
181 GEHDSAENEQ EMSPVRQLGR EIKQENENLI RSIKTESSPK FLNSPDLPER TKLRNISETV 240
241 PYVLRHERIL ARQQKLEELE AQSAKELQKR IQELERKAHE LKLREKLINQ NKLNGSSSSI 300
301 NSLQQSTRSQ IKKNDTYTDL ASIASGRD
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
