YRC Public Data Repository - Protein Structure Prediction

Protein:	DTD1
Organism:	Saccharomyces cerevisiae
Length:	150 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DTD1.

Description	E-value	Query Range	Subject Range
gi\|18676870 - gi\|18676870\|dbj\|BAB85044.1\| unnamed protein product [Homo sapiens]	4.0E-64	[1..149]	[1..148]
gi\|8927562 - gi\|8927562\|gb\|AAF82117.1\|AF276071_1 conserved hypothetical protein [Thermus aquaticus]	5.0E-62	[2..150]	[4..149]
DTD_BACHD - D-tyrosyl-tRNA(Tyr) deacylase OS=Bacillus halodurans GN=dtd PE=3 SV=1 DTD_BACHD - D-aminoacyl-tRNA deacylase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM...	1.0E-61	[1..149]	[1..146]
gi\|24899807, gi\|... - gi\|24899807\|gb\|AAN65118.1\| RNA helicase - like protein [Arabidopsis thaliana], gi\|22328775\|ref\|NP_19...	3.0E-61	[1..150]	[1..150]
DTD_THEMA - D-tyrosyl-tRNA(Tyr) deacylase OS=Thermotoga maritima GN=dtd PE=3 SV=1 DTD_THEMA - D-aminoacyl-tRNA deacylase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) ...	5.0E-61	[1..150]	[1..147]
gi\|12848336 - gi\|12848336\|dbj\|BAB27914.1\| unnamed protein product [Mus musculus]	2.0E-60	[1..149]	[1..148]
gi\|13622995, gi\|... - gi\|15675771\|ref\|NP_269945.1\| D-tyrosyl-tRNA deacylase [Streptococcus pyogenes M1 GAS], gi\|13622995\|g... DTD_STRPD - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=dtd PE=3 SV=1 DTD_STRPQ - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=dtd PE=3 SV=1 DTD_STRPF - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=dtd PE=3 SV=1 DTD_STRPM - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=dtd PE=3 SV=1 DTD_STRPG - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=dtd PE=3 SV=1 gi\|71911498, gi\|... - gi\|71911498\|ref\|YP_283048.1\| D-tyrosyl-tRNA(Tyr) deacylase [Streptococcus pyogenes MGAS5005], gi\|718... DTD_STRP1 - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M1 GN=dtd PE=3 SV=1 DTD_STRPM - D-tyrosyl-tRNA(Tyr) deacylase OS=Streptococcus pyogenes serotype M28 GN=dtd PE=3 SV=1 DTD_STRP3 - D-tyrosyl-tRNA(Tyr) deacylase OS=Streptococcus pyogenes serotype M3 GN=dtd PE=3 SV=1 DTD_STRPY - (P63999) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) DTD_STRP8 - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=dtd PE=3 SV=1 DTD_STRP3 - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=... DTD_STRP8 - D-tyrosyl-tRNA(Tyr) deacylase OS=Streptococcus pyogenes serotype M18 GN=dtd PE=3 SV=1	2.0E-59	[1..149]	[1..145]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIVLQKVSQ ASVVVDSKVI SSIKHGYMLL VGISIDDSMA EIDKLSKKVL SLRIFEDESR  60
   61 NLWKKNIKEA NGEILSVSQF TLMAKTKKGT KPDFHLAQKG HIAKELYEEF LKLLRSDLGE 120
  121 EKVKDGEFGA MMSCSLTNEG PVTIILDSDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	266.38764
Match:	1jkeA_
Description:	D-Tyr tRNAtyr deacylase, DTD
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits