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View Structure Prediction Details

Protein: YDL218W
Organism: Saccharomyces cerevisiae
Length: 317 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL218W.

Description E-value Query
Range
Subject
Range
YD218_YEAST - Uncharacterized membrane protein YDL218W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
YDL218W - Putative protein of unknown function; YDL218W transcription is regulated by Azf1p and induced by sta...
gi|151941789 - gi|151941789|gb|EDN60145.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190405210 - gi|190405210|gb|EDV08477.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
0.0 [1..317] [1..317]

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Predicted Domain #1
Region A:
Residues: [1-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVTGVFLT LLRFSQFASS VLVMSLLAYA IHAYGNRGNK KTNFTLATGV ISVFYLIALG  60
   61 ILCLALPTLI YIGMYFCAEL IVCMLWLAAF VVLAKAQGER SCSNTNADGL YYNPYSGQYT 120
  121 ADSHRRACNS SQAAIAFSGL CFVLFLISVI LLGINVLTPI RKRYQTQGMW RSGASMGTKL 180
  181 HRWSGLALSE PFEETAAYDN TNVRT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term Confidence Notes
binding 0.811519640840312 bayes_pls_golite062009
protein binding 0.289805917204192 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [206-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDVEAGAGDN AAYTSEPNGD ARYATNDPNG QYHTTTTNTR YTTTTADPKT RYTTNDRNPG  60
   61 SANVANSAVD QHAYSTDESG DRSYQEKVTE GAHSGAMSGS TAEPNRNVNQ MP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.298 d.110.4 SNARE-like
View Download 0.295 d.82.2 Frataxin-like
View Download 0.282 c.10.2 L domain-like
View Download 0.337 b.15.1 HSP20-like chaperones
View Download 0.279 b.29.1 Concanavalin A-like lectins/glucanases
View Download 0.243 b.29.1 Concanavalin A-like lectins/glucanases
View Download 0.234 d.85.1 RNA bacteriophage capsid protein
View Download 0.215 f.1.4 Bcl-2 inhibitors of programmed cell death
View Download 0.205 b.61.3 D-aminopeptidase, middle and C-terminal domains
View Download 0.202 d.19.1 MHC antigen-recognition domain

Predicted Domain #3
Region A:
Residues: [285-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDRSYQEKVT EGAHSGAMSG STAEPNRNVN QMP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle