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View Structure Prediction Details

Protein: SHR3
Organism: Saccharomyces cerevisiae
Length: 210 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHR3.

Description E-value Query
Range
Subject
Range
SHR3_YEAST - Secretory component protein SHR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHR3 PE...
SHR3 - Endoplasmic reticulum packaging chaperone, required for incorporation of amino acid permeases into C...
0.0 [1..210] [1..210]
SHR3_SCHPO - Secretory component protein psh3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psh3 PE=3...
psh3 - ER chaperone SHR3 homologue Psh3
5.0E-73 [15..206] [23..215]

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Predicted Domain #1
Region A:
Residues: [1-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSYSDFCSI GTAMILSATT FLMGVFFSNM PYDYHLLFNP NSTQEHFDLA LRHYQILHET  60
   61 PLPVIVTLCV VAGIGLVGGT IKVFKPNPEL QMFEYCSLGL YVLAICVFLT NVKTGIDCSV 120
  121 SHNWGEVTEN QGLAVIASSN IILLVMFAGV IILQIGLWYS NWDLQKRLKE FYAQEEREAA 180
  181 NAGKKTEKVD NAKKNDNKSK GAQKRKNAKK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle