YRC Public Data Repository - Protein Structure Prediction

Protein:	RTN2
Organism:	Saccharomyces cerevisiae
Length:	393 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTN2.

Description	E-value	Query Range	Subject Range
RTN2 - Protein of unknown function; has similarity to mammalian reticulon proteins; member of the RTNLA (re... gi\|190405196 - gi\|190405196\|gb\|EDV08463.1\| hypothetical protein SCRG_00694 [Saccharomyces cerevisiae RM11-1a] RTN2_YEAST - Reticulon-like protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTN2 PE=1 SV=1	0.0	[1..393]	[1..393]
RTNLE_ARATH - Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1	1.0E-68	[2..208]	[40..244]
gi\|125569591, gi... - gi\|34904202\|ref\|NP_913448.1\| P0492F05.25 [Oryza sativa (japonica cultivar-group)], gi\|20804416\|dbj\|B...	4.0E-64	[7..210]	[71..272]
RTN3 - reticulon 3 gi\|114638217, gi... - gi\|114638217\|ref\|XP_001162351.1\| PREDICTED: reticulon 3 isoform 9 [Pan troglodytes], gi\|114638215\|re...	2.0E-56	[1..213]	[1..232]

Back

Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRNTTTNKN ANLNNSRNAN APGEAGHQNK TGLIYWTNPS KSGASFAATL VSLLILRNVN  60
   61 VISVLLKIGY MVLFTSFAVE LSTKVLFDKG VVSRFGMQES PDLVGVLKPH IDRELDRLPA 120
  121 LEDRIRKLVF AHRTRNNFTI GVSLYFLHGL FAIFSMNTVL IMTTIFLYTV PLIYDRKQAR 180
  181 IDRAIDRMKD LVIHRFHKNY NKVVEKTEPY IDKIIPPQTD EGSYSTSISN ENKSSTSQRN 240
  241 KSGLSSSEF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.60206
Match:	PF02453
Description:	Reticulon

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [250-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNMNDTSASK SGKDSYSTSQ YNRAEYPVSQ NENIGTLKSG KQEIPTEKDF NNRHENFSKP  60
   61 DVKTYDPRTV DIEEELAAHQ RELEQNLKDG DYNLVGSKEI PDPITVPAPT RHTTKPAESQ 120
  121 SIPIKNNETL HKTTHGLKQK LQHA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [215-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPPQTDEGSY STSISNENKS STSQRNKSGL SSSEFDNMND TSASKSGKDS YSTSQYNRAE  60
   61 YPVSQNENIG TLKSGKQEIP TEKDFNNRHE NFSKPDVKTY DPRTVDIEEE LAAHQRELEQ 120
  121 NLKDGDYNLV GSKEIPDPIT VPAPTRHTTK PAESQSIPIK NNETLHKTTH GLKQKLQHA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits