YRC Public Data Repository - Protein Structure Prediction

Protein:	YDL157C
Organism:	Saccharomyces cerevisiae
Length:	118 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL157C.

Description	E-value	Query Range	Subject Range
gi\|50289939, gi\|... - gi\|50289939\|ref\|XP_447401.1\| hypothetical protein CAGL0I03520g [Candida glabrata CBS138], gi\|4952671... gi\|49526711 - gi\|49526711\|emb\|CAG60338.1\| unnamed protein product [Candida glabrata]	167.0	[0..1]	[106..1]
gi\|49642073, gi\|... - gi\|50305959\|ref\|XP_452940.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642073\|emb\|CAH0179... gi\|49642073 - gi\|49642073\|emb\|CAH01791.1\| KLLA0C16555p [Kluyveromyces lactis]	157.0	[0..2]	[104..3]
gi\|45185881, gi\|... - gi\|45185881\|ref\|NP_983597.1\| ACR195Wp [Ashbya gossypii ATCC 10895], gi\|44981671\|gb\|AAS51421.1\| ACR19... gi\|44981671 - gi\|44981671\|gb\|AAS51421.1\| ACR195Wp [Ashbya gossypii ATCC 10895]	150.0	[0..1]	[104..2]
gi\|50424799, gi\|... - gi\|50424799\|ref\|XP_460989.1\| hypothetical protein DEHA0F15675g [Debaryomyces hansenii CBS767], gi\|49...	69.0	[0..1]	[101..1]
gi\|49651563 - gi\|49651563\|emb\|CAG78502.1\| YALI0F21087p [Yarrowia lipolytica] gi\|50556570, gi\|... - gi\|50556570\|ref\|XP_505693.1\| YALI0F21087p [Yarrowia lipolytica], gi\|49651563\|emb\|CAG78502.1\| unnamed...	55.0	[0..2]	[87..5]
gi\|238879848 - gi\|238879848\|gb\|EEQ43486.1\| conserved hypothetical protein [Candida albicans WO-1] orf19.4358, orf1... - orf19.4358 CGDID:CAL0001047 Assembly 19, Contig19-10203 (23136, 23438) CDS, translated using codon t... gi\|68481890, gi\|... - gi\|68481890\|ref\|XP_715084.1\| hypothetical protein CaO19.11836 [Candida albicans SC5314], gi\|68481787...	52.0	[0..1]	[93..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNILAVFNP PPQRELEKEE TMDCVPCQVM STMFSVGFGS YLASGKPFKY GKKEAKRGIS  60
   61 LTEFEKRNPQ WWKVTLRSFG GLLIAFGFVR GTEGWLWHKN KEYKNYKKLS NDGETQAN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.281	a.24.22	Description not found.
View	Download	0.256	a.24.4	Hemerythrin
View	Download	0.248	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.241	a.40.3	Description not found.
View	Download	0.230	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain
View	Download	0.230	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain
View	Download	0.213	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View	Download	0.206	a.60.9	lambda integrase-like, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits