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View Structure Prediction Details

Protein: RPL35A, RPL35B
Organism: Saccharomyces cerevisiae
Length: 120 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL35A, RPL35B.

Description E-value Query
Range		 Subject
Range
gi|14269407 - gi|14269407|gb|AAK58055.1| ribosomal protein L35-like protein [Ophiostoma novo-ulmi]
 9.0E-31 [3..120] [18..137]
gi|226285347 - gi|226285347|gb|EEH40913.1| ribosomal protein L35 [Paracoccidioides brasiliensis Pb01]
gi|15808950 - gi|15808950|gb|AAL08563.1|AF416509_1 putative ribosomal protein L35 [Paracoccidioides brasiliensis]
 6.0E-28 [2..120] [4..125]
RL35_ICTPU - 60S ribosomal protein L35 OS=Ictalurus punctatus GN=rpl35 PE=2 SV=3
 2.0E-27 [1..120] [1..123]
CCDS6858.1_1 - null
gi|187609321 - gi|187609321|pdb|2ZKR|VV Chain v, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Compl...
gi|149738325 - gi|149738325|ref|XP_001502098.1| PREDICTED: similar to ribosomal protein L35 [Equus caballus]
gi|109110243 - gi|109110243|ref|XP_001082318.1| PREDICTED: similar to 60S ribosomal protein L35 [Macaca mulatta]
RPL35 - ribosomal protein L35
ENSPTRT00000039513 - null
gi|123980920, gi... - gi|61359253|gb|AAX41689.1| ribosomal protein L35 [synthetic construct], gi|123995735|gb|ABM85469.1| ...
 3.0E-27 [1..120] [1..123]
RL35_CHICK - 60S ribosomal protein L35 OS=Gallus gallus GN=RPL35 PE=2 SV=3
 3.0E-27 [1..120] [1..123]
RL35_PIG - 60S ribosomal protein L35 OS=Sus scrofa GN=RPL35 PE=1 SV=3
 2.0E-26 [1..120] [1..123]
gi|55715939 - gb|AAH86116.1| Unknown (protein for MGC:98516) [Xenopus laevis]
RL35_MOUSE - 60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=1 SV=1
tr|G3HZI1|G3HZI1... - 60S ribosomal protein L35 OS=Cricetulus griseus GN=I79_016485 PE=3 SV=1
RL35_RAT - 60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3
 3.0E-26 [1..120] [1..123]
RL35_EUPES - 60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1
 8.0E-25 [1..119] [1..122]
RL352_ARATH - 60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1
 1.0E-24 [1..119] [1..122]

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Predicted Domain #1
Region A:
Residues: [1-120] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVKAYELR TKSKEQLASQ LVDLKKELAE LKVQKLSRPS LPKIKTVRKS IACVLTVINE  60
   61 QQREAVRQLY KGKKYQPKDL RAKKTRALRR ALTKFEASQV TEKQRKKQIA FPQRKYAIKA 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 157.38764
Match: 1k5yY_
Description: No description for 1k5yY_ was found.
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Created and Maintained by: Michael Riffle