YRC Public Data Repository - Protein Structure Prediction

Protein:	YDL133W
Organism:	Saccharomyces cerevisiae
Length:	437 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL133W.

Description	E-value	Query Range	Subject Range
gi\|1903288 - gi\|1903288\|emb\|CAA98703.1\| unnamed protein product [Saccharomyces cerevisiae]	759.0	[0..33]	[437..1]
gi\|19577359 - gi\|19577359\|emb\|CAD28440.1\| hypothetical protein [Aspergillus fumigatus]	405.0	[0..149]	[425..101]
gi\|66850303, gi\|... - gi\|70995826\|ref\|XP_752668.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668503... gi\|159131422 - gi\|159131422\|gb\|EDP56535.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	339.0	[0..149]	[425..101]
gi\|44982762, gi\|... - gi\|45187978\|ref\|NP_984201.1\| ADR105Wp [Ashbya gossypii ATCC 10895], gi\|44982762\|gb\|AAS52025.1\| ADR10... gi\|44982762 - gi\|44982762\|gb\|AAS52025.1\| ADR105Wp [Ashbya gossypii ATCC 10895]	295.0	[0..70]	[436..49]
gi\|169763372 - gi\|169763372\|ref\|XP_001727586.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83770614 - gi\|83770614\|dbj\|BAE60747.1\| unnamed protein product [Aspergillus oryzae]	290.0	[0..183]	[425..137]
gi\|40746433, gi\|... - gi\|67517678\|ref\|XP_658625.1\| hypothetical protein AN1021.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	286.0	[0..151]	[425..58]
gi\|49527420 - gi\|49527420\|emb\|CAG61060.1\| unnamed protein product [Candida glabrata] gi\|50291353, gi\|... - gi\|50291353\|ref\|XP_448109.1\| unnamed protein product [Candida glabrata], gi\|49527420\|emb\|CAG61060.1\|...	273.0	[0..70]	[437..56]
gi\|49644463, gi\|... - gi\|50310615\|ref\|XP_455327.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644463\|emb\|CAG9803... gi\|49644463 - gi\|49644463\|emb\|CAG98035.1\| KLLA0F05445p [Kluyveromyces lactis]	271.0	[0..142]	[432..178]
gi\|115491903, gi... - gi\|115491903\|ref\|XP_001210579.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	251.0	[0..163]	[431..146]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSNSSQEA YSDTTSTNAS RIADQNQLNL NVDLEKNQTV RKSGSLEALQ NAKIHVPKHS  60
   61 DGSPLDYPKL NTYTFVPTTV PPYVLEAQFD KLRLQDKGTV DGNVTDDKNL PKEFKWGQFA 120
  121 STIGCHSAYT RDQNYNPSHK SY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [143-437]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGYSLSSSTS SKNAALREIL GDMCSEWGGE ERLEGVLHSE IGANLEFNTT EERKEWLQYI  60
   61 EKVKDFYYGD NKKNPESPES VHNKVYKSDW VNELNKEREK WRRLKQRKLQ QWRPPLTSLL 120
  121 LDNQYLILGL RIFTGILSCI SLALAIKIFQ NSRSNNTISE SKIGQQPSTI MAICVNAVAI 180
  181 AYIIYIAHDE FAGKPVGLRN PLSKLKLILL DLLFIIFSSA NLALAFNTRF DKEWVCTSIR 240
  241 RSNGSTYGYP KIPRICRKQE ALSAFLFVAL FMWVITFSIS IVRVVEKVSS ITNRN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits