Protein: | RPP1B |
Organism: | Saccharomyces cerevisiae |
Length: | 106 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPP1B.
Description | E-value | Query Range |
Subject Range |
|
123.0 | [0..2] | [106..4] |
|
110.0 | [0..1] | [106..4] |
|
105.0 | [0..1] | [106..139] |
|
105.0 | [0..1] | [106..4] |
|
103.0 | [0..2] | [106..7] |
|
101.0 | [0..1] | [106..4] |
|
99.0 | [0..1] | [106..4] |
|
98.0 | [0..4] | [106..1] |
Region A: Residues: [1-106] |
1 11 21 31 41 51 | | | | | | 1 MSDSIISFAA FILADAGLEI TSDNLLTITK AAGANVDNVW ADVYAKALEG KDLKEILSGF 60 61 HNAGPVAGAG AASGAAAAGG DAAAEEEKEE EAAEESDDDM GFGLFD |
Detection Method: | |
Confidence: | 39.677781 |
Match: | PF00428.10 |
Description: | No description for PF00428.10 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.518 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
View | Download | 0.518 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
View | Download | 0.507 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.423 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.358 | N/A | N/A | a.144.2 | Ribosomal protein L20 |
View | Download | 0.354 | N/A | N/A | a.4.1 | Homeodomain-like |
View | Download | 0.354 | N/A | N/A | a.4.1 | Homeodomain-like |
View | Download | 0.343 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.285 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
View | Download | 0.271 | N/A | N/A | a.118.8 | TPR-like |