YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PCL2
Organism: Saccharomyces cerevisiae
Length: 279 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCL2.

Description E-value Query
Range		 Subject
Range
gi|254022 - gi|254022|gb|AAB22970.1| cyclin B1 [Mus sp.]
CCNB1_MOUSE - G2/mitotic-specific cyclin-B1 OS=Mus musculus GN=Ccnb1 PE=1 SV=3
 2.0E-79 [2..278] [155..424]
CCNB1, CGB1 - chorionic gonadotropin, beta polypeptide 1, cyclin B1
gi|123990181 - gi|123990181|gb|ABM83901.1| cyclin B1 [synthetic construct]
 2.0E-79 [2..278] [158..427]
CCNB1_ORYCU - G2/mitotic-specific cyclin-B1 OS=Oryzias curvinotus GN=ccnb1 PE=2 SV=1
 1.0E-78 [2..278] [128..397]
gi|157423093, gi... - gi|7328938|dbj|BAA92876.1| cyclin B1 [Danio rerio], gi|31323423|gb|AAP47013.1| cyclin-B [Danio rerio...
 2.0E-78 [2..278] [125..394]
CCNB2_RANJA - G2/mitotic-specific cyclin-B2 OS=Rana japonica GN=CCNB2 PE=2 SV=1
 5.0E-78 [2..278] [117..386]
gi|197693462 - gi|197693462|gb|ACH71406.1| B2 cyclin [Dicistronic cloning vector pXL-Id]
CCNB2_XENLA - G2/mitotic-specific cyclin-B2 OS=Xenopus laevis GN=ccnb2 PE=1 SV=1
gi|197693458 - gi|197693458|gb|ACH71403.1| B2 cyclin [Dicistronic cloning vector pXLJ Con]
 1.0E-77 [2..278] [119..388]
gi|13605768 - gi|13605768|gb|AAK32876.1| cyclin B2 [Rana dybowskii]
 1.0E-77 [2..278] [119..388]
CGB1_CRILO - (Q08301) G2/mitotic-specific cyclin B1
CCNB1_CRIGR - G2/mitotic-specific cyclin-B1 OS=Cricetulus griseus GN=CCNB1 PE=2 SV=1
 2.0E-77 [2..278] [154..423]
CCNB1_MESAU - G2/mitotic-specific cyclin-B1 OS=Mesocricetus auratus GN=CCNB1 PE=2 SV=1
 4.0E-77 [2..278] [154..423]

Back

Predicted Domain #1
Region A:
Residues: [1-25] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNYEALLKF NRKAVSKEMV QYLAS

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [150-279] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDLITCLSPF LKPIKEEQLY KSQRDCRTLK NFSAQEKDIV NKTSISHSRS SSNMSIPSLA  60
   61 STSTLSTLES RRSNLSNYSN RIRTLPELHE SNNISDKFSP RTYNIDSKHD NKEIGQYRQL 120
  121 SLLILVKRAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.0
Match: 1vin__
Description: Cyclin A
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [26-149] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTASIIKIKK TNSMIDIALP APPLTKFINR LIKHSNVQTP TLMATSVYLA KLRSIIPSNV  60
   61 YGIETTRHRI FLGCLILAAK TLNDSSPLNK HWAEYTDGLL ILREVNTIER ELLEYFDWDV 120
  121 TIST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.0
Match: 1vin__
Description: Cyclin A
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle