YRC Public Data Repository - Protein Structure Prediction

Protein:	YDL114W
Organism:	Saccharomyces cerevisiae
Length:	308 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL114W.

Description	E-value	Query Range	Subject Range
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	9.0E-86	[34..271]	[1..243]
gi\|25283158 - pir\|\|C83961 3-oxoacyl-(acyl-carrier protein) reductase fabG [imported] - Bacillus halodurans (strain... gi\|10175111, gi\|... - gi\|15615054\|ref\|NP_243357.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Bacillus halodurans C-125],...	2.0E-83	[35..273]	[1..245]
gi\|18310052, gi\|... - gi\|18310052\|ref\|NP_561986.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens st...	6.0E-83	[35..273]	[1..245]
gi\|1502421 - gi\|1502421\|gb\|AAC44307.1\| 3-ketoacyl-acyl carrier protein reductase gi\|1502421\|gb\|AA... - 3-ketoacyl-acyl carrier protein reductase	2.0E-81	[35..273]	[1..245]
gi\|221313791 - gi\|221313791\|ref\|ZP_03595596.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221318715 - gi\|221318715\|ref\|ZP_03600009.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221322986 - gi\|221322986\|ref\|ZP_03604280.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis GN=fabG PE=3 SV=3 FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis (strain 168) GN=fabG PE=3 SV=3	4.0E-81	[35..273]	[1..245]
FABG_AQUAE - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Aquifex aeolicus (strain VF5) GN=fabG PE=1 SV=1 FABG_AQUAE - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Aquifex aeolicus GN=fabG PE=1 SV=1	4.0E-79	[32..272]	[1..247]
gi\|16800987 - gi\|16800987\|ref\|NP_471255.1\| hypothetical protein lin1921 [Listeria innocua Clip11262] gi\|25283285, gi\|... - pir\|\|AG1672 3-ketoacyl-acyl carrier protein reductase homolog fabG [imported] - Listeria innocua (st...	4.0E-78	[34..273]	[1..246]
gi\|25283197 - pir\|\|F97338 3-ketoacyl-acyl carrier protein reductase [imported] - Clostridium acetobutylicum gi\|15896808, gi\|... - gi\|15896808\|ref\|NP_350157.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium acetobutylicum...	4.0E-78	[32..273]	[1..248]
gi\|17232674, gi\|... - gi\|17232674\|ref\|NP_489222.1\| oxidoreductase [Nostoc sp. PCC 7120], gi\|17134321\|dbj\|BAB76881.1\| oxido... gi\|25283433 - pir\|\|AF2453 oxidoreductase alr5182 [imported] - Nostoc sp. (strain PCC 7120)	5.0E-78	[13..271]	[16..280]

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Predicted Domain #1

Region A:
Residues: [1-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRKNKINRA SGTTKHLKDF PSVILSLPSY NPSILSKNAT ALITGGSSGL GFELAKELSR  60
   61 RINKVIVADI QSFPTFAQVE YNNIFYYQCD ITSLDEIKNL KKAIERDHGN INIIINNAGV 120
  121 AHIKKLEHMT NKEVEQLIDI NLIGAYRIIS TFAEDMIDNR EGFIINIASV LGELTPARLT 180
  181 SYGASKGAMI GFHKCMSRHF RSLSTECNKT GIKTLLVCPG KIKTNMFIDV PTPSKLLAPD 240
  241 IIPSQLALAI ISAMEHNHLQ TLNAPYYVNL VPFFKTLSWP YRHLLKHFSG MDHVTSTSPR 300
  301 AINPKRSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	243.69897
Match:	1i01A_
Description:	beta-keto acyl carrier protein reductase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits