| Protein: | ATG20 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 640 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG20.
| Description | E-value | Query Range |
Subject Range |
|
|
7.0E-96 | [1..640] | [1..640] |
|
|
2.0E-76 | [202..635] | [1117..1582] |
|
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4.0E-72 | [202..638] | [1109..1577] |
|
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1.0E-71 | [127..638] | [1031..1581] |
|
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2.0E-71 | [127..635] | [1032..1578] |
|
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5.0E-71 | [184..635] | [1087..1576] |
|
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8.0E-71 | [202..638] | [1118..1586] |
|
Region A: Residues: [1-157] |
1 11 21 31 41 51
| | | | | |
1 MSDLNDVQEN AKLNSETRNT GKAEPPHGTT EYVAEAEISK NGVGSPKKSP KKGKVGKGDN 60
61 NKVETELVHT ALLEKDNPFM EEGPTGFTKS ALLEIPGMRS HNLKNPNEDY EDDSEGLLPL 120
121 NQESNAETCR TSLSGSINSM NGETSASEEP SVSNRKK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [158-518] |
1 11 21 31 41 51
| | | | | |
1 SARIHILEAK RVSEGQGRAY IAYVIQFENS TVQRRYSDFE SLRSILIRLF PMTLIPPIPE 60
61 KQSIKNYGKS ITGSSSKYLL PSEGSGSVDL SLSVIHASVN NSDEKLIRHR IRMLTEFLNK 120
121 LLTNEEITKT SIITDFLDPN NHNWHEFVNS SSTFSSLPKS ILQCNPLDPT NTTRIHAMLP 180
181 IPGSSSQLLL NKESNDKKMD KERSKSFTNI EQDYKQYENL LDNGIYKYNR RTTKTYHDLK 240
241 SDYNEIGEVF AQFAHEQAQV GELAEQLSYL SNAFSGSSIS LEKLVGRLYY NINEPLNESV 300
301 HMATSARELI KYRKLKYLQN EMIKKSLNSK RAQLEKLEAQ NNEYKDVDKI IDNEMSKSHT 360
361 I
|
| Detection Method: | |
| Confidence: | 15.221849 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [519-640] |
1 11 21 31 41 51
| | | | | |
1 NLERPNNNTG SGGKSYGGKL FNGFNKLASM VKDSVKYQET DPHTASINLK KEIEQLSESL 60
61 EVTENDLEVI SKVIKNDQLP KFSKEREVDL SEILKHYSRY MRNYARQNLE IWKEVKRHQD 120
121 FA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.607 | 0.028 | protein targeting to vacuole | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.821 | 0.025 | protein targeting to vacuole | a.24.4 | Hemerythrin |
| View | Download | 0.506 | 0.023 | protein targeting to vacuole | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.579 | 0.022 | protein targeting to vacuole | a.144.1 | PABC (PABP) domain |
| View | Download | 0.451 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.436 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.402 | N/A | N/A | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.378 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.374 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.339 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.336 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.312 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.271 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.269 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.267 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.266 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.258 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.257 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.255 | N/A | N/A | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.253 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.253 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.249 | N/A | N/A | a.158.1 | F-box domain |
| View | Download | 0.245 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.244 | N/A | N/A | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.243 | N/A | N/A | d.44.1 | Fe,Mn superoxide dismutase (SOD), C-terminal domain |
| View | Download | 0.242 | N/A | N/A | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.239 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.238 | N/A | N/A | a.21.1 | HMG-box |
| View | Download | 0.235 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.235 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.234 | N/A | N/A | b.43.5 | Riboflavin kinase |
| View | Download | 0.230 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.230 | N/A | N/A | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.223 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.222 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.218 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.216 | N/A | N/A | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.216 | N/A | N/A | d.58.47 | Hypothetical protein VC0424 |
| View | Download | 0.216 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.214 | N/A | N/A | a.4.12 | TrpR-like |
| View | Download | 0.211 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.208 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.206 | N/A | N/A | a.7.4 | Smac/diablo |
| View | Download | 0.202 | N/A | N/A | c.23.1 | CheY-like |
