YRC Public Data Repository - Protein Structure Prediction

Protein:	TMA17
Organism:	Saccharomyces cerevisiae
Length:	150 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMA17.

Description	E-value	Query Range	Subject Range
gi\|49526557 - gi\|49526557\|emb\|CAG60181.1\| unnamed protein product [Candida glabrata] gi\|49526557, gi\|... - gi\|50289633\|ref\|XP_447248.1\| unnamed protein product [Candida glabrata], gi\|49526557\|emb\|CAG60181.1\|...	136.0	[0..1]	[150..1]
gi\|49643502, gi\|... - gi\|50308727\|ref\|XP_454367.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643502\|emb\|CAG9945... gi\|49643502 - gi\|49643502\|emb\|CAG99454.1\| KLLA0E09263p [Kluyveromyces lactis]	100.0	[0..1]	[148..1]
gi\|44986408 - gi\|44986408\|gb\|AAS54868.1\| AGR378Cp [Ashbya gossypii ATCC 10895] gi\|44986408, gi\|... - gi\|45201474\|ref\|NP_987044.1\| AGR378Cp [Ashbya gossypii ATCC 10895], gi\|44986408\|gb\|AAS54868.1\| AGR37...	77.0	[0..8]	[110..8]
gi\|49657957, gi\|... - gi\|50427349\|ref\|XP_462287.1\| hypothetical protein DEHA0G18359g [Debaryomyces hansenii CBS767], gi\|50...	57.0	[0..9]	[110..6]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSAGGIRRP IQIEEFKTAI SGMSDMELAQ IKTEIENSIN HLQRSNARLG KYIAKLEGAD  60
   61 DRLEADDSDD LENIDSGDLA LYKDSVRENE IVLNNYNERV DALEQETVYR KTGHGKSKHE 120
  121 VEAKDNTNKG PDVDMDNSNV DVVTPNSIFI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.22
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits