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View Structure Prediction Details

Protein: SRP14
Organism: Saccharomyces cerevisiae
Length: 146 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRP14.

Description E-value Query
Range
Subject
Range
SRP14 - Signal recognition particle (SRP) subunit, interacts with the RNA component of SRP to form the Alu d...
SRP14_YEAST - Signal recognition particle subunit SRP14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
gi|190405099 - gi|190405099|gb|EDV08366.1| hypothetical protein SCRG_00589 [Saccharomyces cerevisiae RM11-1a]
1.0E-77 [1..146] [1..146]

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Predicted Domain #1
Region A:
Residues: [1-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTGCLSPG AFLSKVPEFF QTANEKHITV RLTAKRLIEH DPVEGNLEFD STNHPDYDVS  60
   61 KKASEISVSS RSDREYPLLI RMSYGSHDKK TKCSTVVKAS ELDQFWQEYS SVFKGGMQNL 120
  121 IKKKKKKSKN GTISKTGKKN KVAKKN

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.64
Match: 1e8oB
Description: Signal recognition particle 14KDa protein, SRP14
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle