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View Structure Prediction Details

Protein: NUR1
Organism: Saccharomyces cerevisiae
Length: 484 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUR1.

Description E-value Query
Range
Subject
Range
NUR1_YEAST - Nuclear rim protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUR1 PE=1 SV=1
NUR1 - Protein of unknown function; interacts with Csm1p, Lrs4p; required for rDNA repeat stability; null m...
0.0 [1..484] [1..484]

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Predicted Domain #1
Region A:
Residues: [1-484]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSNDLINEA YDDSEVVGEE RESKSAWMKR WYQLLTSPLD LQLVINEKLE MINWDAYAKS  60
   61 LAKPLGNFLT ILFFIIRLLQ DNLIKPNYYK LNVKSGAFDL SKSNKLKEFD YLWEISSSFQ 120
  121 NNNQFYAFQS WYFVTLRFLN NLFRFTIFIL LSLNLYVSCK FMFGYFKTYN LFHLKKEFNS 180
  181 PNLTKHNLKD LSKEYYEDIY KQSLWSMLKH FFRGSRDDGP HVNQNEDEIF FQLRKWIPTN 240
  241 FMINLFVSFS PTAIVFLSFS DVSFTSAIAI VFHQYILDYI ITKRFQRSVD DDLILSSAAL 300
  301 QEYEDKHIMA RINQCSNIDT LSSAMGTRSK TPRIFTTHSL CGEEIREVYN YEKREFEALP 360
  361 KMTESVPGSR ETRIKDYGGI SQVSDHQSHP IGFHYSPRMS PYYRDKVLDN NLAQSSSNEN 420
  421 LEKGGAYLPN QDQNRPSKSL SPLRKTPLSA RQKRFEGSEF NVLNKNDINS ILRSPKKKKN 480
  481 YHKR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle