| Protein: | NDE2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 545 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDE2.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..545] | [1..545] |
|
|
1.0E-98 | [86..544] | [80..549] |
|
|
7.0E-92 | [8..544] | [36..580] |
|
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3.0E-89 | [50..524] | [1..466] |
|
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2.0E-87 | [86..524] | [26..460] |
|
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4.0E-87 | [97..542] | [12..424] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MLPRLGFART ARSIHRFKMT QISKPFFHST EVGKPGPQQK LSKSYTAVFK KWFVRGLKLT 60
61 FYTTLAGTLY VSYELYKESN PPKQVPQ
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.519 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.472 | a.2.3 | Chaperone J-domain |
| View | Download | 0.519 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.494 | a.7.1 | Spectrin repeat |
| View | Download | 0.472 | a.2.3 | Chaperone J-domain |
| View | Download | 0.494 | a.7.1 | Spectrin repeat |
| View | Download | 0.474 | a.47.2 | t-snare proteins |
| View | Download | 0.474 | a.47.2 | t-snare proteins |
| View | Download | 0.547 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.547 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.349 | a.2.7 | tRNA-binding arm |
| View | Download | 0.345 | a.118.1 | ARM repeat |
| View | Download | 0.332 | d.95.2 | Homing endonucleases |
| View | Download | 0.330 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.314 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.302 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.298 | a.47.2 | t-snare proteins |
| View | Download | 0.296 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.295 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.287 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.272 | a.22.1 | Histone-fold |
| View | Download | 0.263 | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.259 | a.39.1 | EF-hand |
| View | Download | 0.255 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.251 | d.95.2 | Homing endonucleases |
| View | Download | 0.245 | a.1.1 | Globin-like |
| View | Download | 0.243 | a.64.1 | Saposin |
| View | Download | 0.236 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.233 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.228 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.212 | a.112.1 | Description not found. |
| View | Download | 0.209 | a.39.1 | EF-hand |
| View | Download | 0.206 | a.118.1 | ARM repeat |
| View | Download | 0.204 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.203 | a.7.7 | BAG domain |
| View | Download | 0.201 | a.142.1 | PTS-regulatory domain, PRD |
|
Region A: Residues: [88-210] |
1 11 21 31 41 51
| | | | | |
1 STAFANGLKK KELVILGTGW GAISLLKKLD TSLYNVTVVS PRSFFLFTPL LPSTPVGTIE 60
61 MKSIVEPVRS IARRTPGEVH YIEAEALDVD PKAKKVMVQS VSEDEYFVSS LSYDYLVVSV 120
121 GAK
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|
Region B: Residues: [368-445] |
1 11 21 31 41 51
| | | | | |
1 NEPIDFSKTL MSRIPEQTNR RGLLINDKLE LLGSENSIYA IGDCTAHTGF FPTAQVAHQE 60
61 GEYLAKILDK KLQIEQLE
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| Detection Method: | |
| Confidence: | 85.221849 |
| Match: | 1dxlA_ |
| Description: | Dihydrolipoamide dehydrogenase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [211-367] |
1 11 21 31 41 51
| | | | | |
1 TTTFNIPGVY GNANFLKEIE DAQNIRMKLM KTIEQASSFP VNDPERKRLL TFVVVGGGPT 60
61 GVEFAAELQD YINQDLRKWM PDLSKEMKVI LIEALPNILN MFDKTLIKYA EDLFARDEID 120
121 LQVNTAVKVV EPTYIRTLQN GQTNTDIEYG MLVWATG
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|
Region B: Residues: [446-545] |
1 11 21 31 41 51
| | | | | |
1 WDMLNSTDET EVSRLQKEVN LRKSKLDKFN YKHMGALAYI GSETAIADLH MGDSSYQLKG 60
61 MFAFLFWKSA YLAMCLSIRN RILIAMDWTK VYFLGRDSSV
|
| Detection Method: | |
| Confidence: | 85.221849 |
| Match: | 1dxlA_ |
| Description: | Dihydrolipoamide dehydrogenase |
| Matching Structure (courtesy of the PDB): |
|
