YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS16B, RPS16A
Organism:	Saccharomyces cerevisiae
Length:	143 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS16B, RPS16A.

Description	E-value	Query Range	Subject Range
RPS16 - ribosomal protein S16 gi\|126329113 - gi\|126329113\|ref\|XP_001363137.1\| PREDICTED: similar to Rps16 protein [Monodelphis domestica] RS16_MOUSE - 40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=1 SV=4 gi\|57714 - gi\|57714\|emb\|CAA35662.1\| unnamed protein product [Rattus rattus] gi\|114677186, gi... - gi\|55649139\|ref\|XP_512651.1\| PREDICTED: similar to Rps16 protein isoform 8 [Pan troglodytes], gi\|114... gi\|90077430 - gi\|90077430\|dbj\|BAE88395.1\| unnamed protein product [Macaca fascicularis] ENSCJAT00000027549 - null RS16_RAT - 40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2 gi\|149722116 - gi\|149722116\|ref\|XP_001498092.1\| PREDICTED: similar to ribosomal protein S16 [Equus caballus] RS16_BOVIN - 40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3 gi\|123999282, gi... - gi\|60655875\|gb\|AAX32501.1\| ribosomal protein S16 [synthetic construct], gi\|123999282\|gb\|ABM87218.1\| ... gi\|187609262 - gi\|187609262\|pdb\|2ZKQ\|II Chain i, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Compl... RS16_PIG - 40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=1 SV=4 gi\|109124684 - gi\|109124684\|ref\|XP_001087931.1\| PREDICTED: similar to 40S ribosomal protein S16 isoform 2 [Macaca m...	7.0E-53	[4..143]	[7..146]
RS16_HETFO - 40S ribosomal protein S16 OS=Heteropneustes fossilis GN=rps16 PE=2 SV=1	1.0E-52	[4..143]	[7..146]
RS16_ICTPU - 40S ribosomal protein S16 OS=Ictalurus punctatus GN=rps16 PE=2 SV=1	2.0E-52	[4..143]	[7..146]
RS161_ARATH - 40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1	2.0E-50	[3..143]	[6..146]
gi\|7305445, gi\|2... - gi\|7305445\|ref\|NP_038675.1\| ribosomal protein S16 [Mus musculus], gi\|200796\|gb\|AAA03646.1\| 16S ribos...	4.0E-50	[4..143]	[7..145]
RS16_SPOFR - 40S ribosomal protein S16 OS=Spodoptera frugiperda GN=RpS16 PE=2 SV=1	8.0E-50	[4..143]	[12..151]
gi\|6984222 - gi\|6984222\|gb\|AAF34799.1\|AF227979_1 40S ribosomal protein S16 [Euphorbia esula]	1.0E-49	[5..143]	[6..144]
gi\|190405089 - gi\|190405089\|gb\|EDV08356.1\| ribosomal protein S16B [Saccharomyces cerevisiae RM11-1a] RPS16B, RPS16A - Protein component of the small (40S) ribosomal subunit; identical to Rps16Ap and has similarity to E... Sbay_4.164 - null gi\|151941919, gi... - gi\|151945844\|gb\|EDN64076.1\| ribosomal protein S16A [Saccharomyces cerevisiae YJM789], gi\|151941919\|g... RS16A_YEAST, RS1... - 40S ribosomal protein S16-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS16B PE=1 ...	1.0E-49	[1..143]	[1..143]
RS16_GOSHI - 40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1	2.0E-49	[1..143]	[1..145]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVPSVQTF GKKKSATAVA HVKAGKGLIK VNGSPITLVE PEILRFKVYE PLLLVGLDKF  60
   61 SNIDIRVRVT GGGHVSQVYA IRQAIAKGLV AYHQKYVDEQ SKNELKKAFT SYDRTLLIAD 120
  121 SRRPEPKKFG GKGARSRFQK SYR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	731.40824
Match:	1k5xI_
Description:	No description for 1k5xI_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits