| Protein: | BRE1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 700 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BRE1.
| Description | E-value | Query Range |
Subject Range |
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6.0E-78 | [1..658] | [1048..1690] |
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1.0E-76 | [1..658] | [1049..1691] |
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2.0E-76 | [1..658] | [1050..1692] |
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2.0E-76 | [1..658] | [1051..1693] |
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2.0E-76 | [1..658] | [47..689] |
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2.0E-76 | [1..658] | [1050..1692] |
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Region A: Residues: [1-342] |
1 11 21 31 41 51
| | | | | |
1 MTAEPATKKI KLELSDPSEP LTQSDVIAFQ KEALFRCINR RRVDFEALRK QYELSRRECI 60
61 DVSRKLANIM ALIVTLARFI ETFCTDANEK QLCREIAQGD ETLIVQRSDS FMKLLTKYGK 120
121 PNTTDSNTNS NASDHIQELT TELKNLRKSK EELFYENSQL TEEISALKEY YTNIIRKYDR 180
181 DESFTIKRVF KEDKTDAVKE LREDEKESNE NNIKSGNKDS SAINGDNTSK KSEKGDELVQ 240
241 AEDERKEDAE NEKLELDLKF SDLRAEINSL SSTIKDLENI RRENEEELIK TRSEVSNLKK 300
301 QQIAAADQDP DFKSYDHESL LAKIQHLTEQ NAELSEINSS FL
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| Detection Method: |  |
| Confidence: | 21.522879 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [343-400] |
1 11 21 31 41 51
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1 SKFQVLAKEK EIYTKKVREE FQKSLDSLVE MNSSLEKDVV RIRTARDDLL SKIAILEA
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.545 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.607 | a.30.1 | ROP protein |
| View | Download | 0.536 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.535 | a.126.1 | Serum albumin-like |
| View | Download | 0.641 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.520 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.481 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.388 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.386 | g.2.2 | Neurotoxin B-IV |
| View | Download | 0.384 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.376 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.355 | a.4.1 | Homeodomain-like |
| View | Download | 0.354 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.341 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.297 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.293 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.291 | a.64.1 | Saposin |
| View | Download | 0.289 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.285 | a.2.7 | tRNA-binding arm |
| View | Download | 0.283 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.278 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.263 | a.2.7 | tRNA-binding arm |
| View | Download | 0.263 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.244 | d.120.1 | Cytochrome b5 |
| View | Download | 0.243 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.240 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.230 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.230 | a.46.1 | Methionine synthase domain |
| View | Download | 0.222 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.221 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.220 | d.58.17 | Metal-binding domain |
| View | Download | 0.213 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.212 | a.24.4 | Hemerythrin |
| View | Download | 0.208 | a.66.1 | Transducin (alpha subunit), insertion domain |
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Region A: Residues: [401-470] |
1 11 21 31 41 51
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1 EKSKTEVLSD LQHAIDILKE QWTKIDQRSN DTKSSSTQDA LIKEIQDLEK GFRELSDLTH 60
61 KKYSEIINHE
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| Detection Method: | |
| Confidence: | 9.522879 |
| Match: | 1c1gA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [471-700] |
1 11 21 31 41 51
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1 SVISKLTVEK TKADQKYFAA MRSKDSILIE IKTLSKSLSK SNELILQLKD SDRLLQQKIG 60
61 NLHKQLDLSQ NNERRLIDSS KTETLKIIDL NNTSTKLKRS LEKLQEESNK SIADMTHLET 120
121 KLNDTEIELK HFKQKASHLE SKCEKLHDTL FRGNNKNKGS SDEALVEELA NFRTLVYCSL 180
181 CSKNWKNMAI KTCGHVFCEN CCKERLAARM RKCPTCNKAF SSNDLLTVHL
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| Detection Method: | |
| Confidence: | 9.522879 |
| Match: | 1c1gA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
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