| Protein: | BDF2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 638 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BDF2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..622] | [1..622] |
|
|
2.0E-88 | [109..638] | [3..475] |
|
|
6.0E-88 | [5..629] | [78..687] |
|
|
6.0E-82 | [108..627] | [1..617] |
|
|
5.0E-81 | [56..635] | [1..554] |
|
Region A: Residues: [1-121] |
1 11 21 31 41 51
| | | | | |
1 MSRTNMDTRH AHSALLAAPQ SATANSRSSN SSSESSSNKN NINVGVGDDS GNVSAVSIDD 60
61 GPHFRDIFHY GHEENYKLAS SGITNLNSSS HAHQTLSPIS ISNASTPESF PEHPLGLERE 120
121 T
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.414 | d.15.2 | CAD & PB1 domains |
|
Region A: Residues: [122-242] |
1 11 21 31 41 51
| | | | | |
1 EPALEAEMEA EELPPHQSKY LLSSIKATKR LKDARPFLKP VDPIALNIPH YFNYVQTPMD 60
61 LSLIETKLQG NVYHSVEQVT SDFKTMVDNC LNFNGPESSI SSMAKRIQKY FEKKLSAMPP 120
121 R
|
| Detection Method: | |
| Confidence: | 29.552842 |
| Match: | PF00439 |
| Description: | Bromodomain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [243-315] |
1 11 21 31 41 51
| | | | | |
1 VLPASALKKT SRNRKKNEDM DSPLVIRRSV STTNDNIGES GNREGVSGGR PKRTIHPPKS 60
61 KDLFDIYENS KPK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.219 | 0.888 | nucleus | a.4.1 | Homeodomain-like |
| View | Download | 0.320 | 0.888 | nucleus | a.60.8 | HRDC-like |
|
Region A: Residues: [316-445] |
1 11 21 31 41 51
| | | | | |
1 SKTLQKKFRT CLKILKVLMS KKNSDINFPF LQPVDPIALN LPNYFDVVKN PMDLGTISNN 60
61 LMNWKYKTID QFVDDLNLVF YNCFQFNPEG NEVHSMGKKL KELFNFHWLE NQDILNEIET 120
121 DSDLEEDNYS
|
| Detection Method: | |
| Confidence: | 131.533179 |
| Match: | 1e6iA_ |
| Description: | GCN5 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [446-502] |
1 11 21 31 41 51
| | | | | |
1 SSYSSDDEYD DEDINENDIT NPAIQYLEQK LKKMEVELQQ LKRQELSKLS KERKRKH
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.807 | 0.002 | nucleus | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.399 | 0.002 | nucleus | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.634 | 0.002 | nucleus | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.485 | 0.002 | nucleus | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.405 | 0.002 | nucleus | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.398 | 0.002 | nucleus | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.394 | 0.002 | nucleus | a.2.7 | tRNA-binding arm |
| View | Download | 0.393 | 0.002 | nucleus | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.373 | 0.002 | nucleus | a.30.1 | ROP protein |
| View | Download | 0.359 | 0.002 | nucleus | a.140.2 | SAP domain |
| View | Download | 0.327 | 0.002 | nucleus | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.327 | 0.002 | nucleus | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.325 | 0.002 | nucleus | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.320 | 0.002 | nucleus | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.315 | 0.002 | nucleus | a.144.1 | PABC (PABP) domain |
| View | Download | 0.313 | 0.002 | nucleus | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.308 | 0.002 | nucleus | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.307 | 0.002 | nucleus | a.4.1 | Homeodomain-like |
| View | Download | 0.302 | 0.002 | nucleus | a.4.1 | Homeodomain-like |
| View | Download | 0.285 | 0.002 | nucleus | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.284 | 0.002 | nucleus | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.282 | 0.002 | nucleus | a.30.1 | ROP protein |
| View | Download | 0.270 | 0.002 | nucleus | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.267 | 0.002 | nucleus | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.262 | 0.002 | nucleus | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.256 | 0.002 | nucleus | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.255 | 0.002 | nucleus | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.250 | 0.002 | nucleus | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.248 | 0.002 | nucleus | a.32.1 | Transcription factor IIA (TFIIA), alpha-helical domain |
| View | Download | 0.248 | 0.002 | nucleus | a.140.2 | SAP domain |
| View | Download | 0.244 | 0.002 | nucleus | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.240 | 0.002 | nucleus | a.4.1 | Homeodomain-like |
| View | Download | 0.239 | 0.002 | nucleus | a.77.1 | DEATH domain |
| View | Download | 0.228 | 0.002 | nucleus | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.225 | 0.002 | nucleus | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.225 | 0.002 | nucleus | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.218 | 0.002 | nucleus | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.217 | 0.002 | nucleus | a.140.2 | SAP domain |
| View | Download | 0.216 | 0.002 | nucleus | a.140.3 | Rho termination factor, N-terminal domain |
| View | Download | 0.213 | 0.002 | nucleus | a.64.1 | Saposin |
| View | Download | 0.213 | 0.002 | nucleus | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.213 | 0.002 | nucleus | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.209 | 0.002 | nucleus | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.206 | 0.002 | nucleus | a.140.2 | SAP domain |
| View | Download | 0.205 | 0.002 | nucleus | a.140.1 | LEM domain |
| View | Download | 0.204 | 0.002 | nucleus | a.140.2 | SAP domain |
| View | Download | 0.201 | 0.002 | nucleus | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
|
Region A: Residues: [503-638] |
1 11 21 31 41 51
| | | | | |
1 LGKTLLRRKA MKHSVDDLKK SITDKINELS DLEMNGMIRI IKNSLPADEI LTSNEDEIEI 60
61 DLDILDEATI ARIYERYFEK KNNNNSKRKL SGNYSTAPTN KKKKTLKFLE KDEIINNNNY 120
121 SDSEEDSSDS SDSDSD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.613 | 0.749 | nucleus | a.118.1 | ARM repeat |
| View | Download | 0.468 | 0.000 | nucleus | a.118.9 | ENTH/VHS domain |
| View | Download | 0.540 | 0.000 | nucleus | c.10.1 | RNI-like |
| View | Download | 0.482 | 0.000 | nucleus | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.430 | 0.000 | nucleus | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.361 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.355 | N/A | N/A | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.312 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.273 | N/A | N/A | c.23.1 | CheY-like |
| View | Download | 0.264 | N/A | N/A | a.118.18 | Cysteine rich protein B (HcpB) |
| View | Download | 0.251 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.244 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.243 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.222 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.213 | N/A | N/A | a.118.1 | ARM repeat |
