YRC Public Data Repository - Protein Structure Prediction

Protein:	COX9
Organism:	Saccharomyces cerevisiae
Length:	59 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX9.

Description	E-value	Query Range	Subject Range
COX9_SCHPO - Cytochrome c oxidase subunit 7A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox9 PE=3 ... cox9 - cytochrome c oxidase subunit VIIa	107.0	[0..1]	[58..1]
COX9_CANGA - Cytochrome c oxidase subunit 7A OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 06... COX9_CANGA - Cytochrome c oxidase subunit 7A OS=Candida glabrata GN=COX9 PE=3 SV=3	92.0	[0..2]	[59..3]
COX9_KLULA - Cytochrome c oxidase subunit 7A OS=Kluyveromyces lactis GN=COX9 PE=3 SV=3 COX9_KLULA - Cytochrome c oxidase subunit 7A OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / N...	84.0	[0..2]	[59..3]
COX9_ASHGO - Cytochrome c oxidase subunit 7A OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRR... COX9_ASHGO - Cytochrome c oxidase subunit 7A OS=Ashbya gossypii GN=COX9 PE=3 SV=3	79.0	[0..2]	[58..3]
COX9_DEBHA - Cytochrome c oxidase subunit 7A OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / N... COX9_DEBHA - Cytochrome c oxidase subunit 7A OS=Debaryomyces hansenii GN=COX9 PE=3 SV=3	68.0	[0..1]	[59..1]
gi\|46136727, gi\|... - gi\|46136727\|ref\|XP_390055.1\| hypothetical protein FG09879.1 [Gibberella zeae PH-1], gi\|42547262\|gb\|E...	66.0	[0..1]	[58..1]
gi\|240107476 - gi\|240107476\|gb\|EER25661.1\| cytochrome c oxidase subunit 7A precursor, putative [Coccidioides posada... gi\|90304990, gi\|... - gi\|90304990\|gb\|EAS34621.1\| predicted protein [Coccidioides immitis RS], gi\|119191195\|ref\|XP_00124620...	64.0	[0..1]	[58..1]
gi\|111059595 - gi\|111059595\|gb\|EAT80715.1\| predicted protein [Phaeosphaeria nodorum SN15]	64.0	[0..1]	[57..1]
gi\|32410381, gi\|... - gi\|32410381\|ref\|XP_325671.1\| predicted protein [Neurospora crassa], gi\|28921535\|gb\|EAA30840.1\| predi... gi\|85095386 - gi\|85095386\|ref\|XP_960076.1\| hypothetical protein NCU05816 [Neurospora crassa OR74A]	59.0	[0..2]	[57..5]
gi\|70998921, gi\|... - gi\|70998921\|ref\|XP_754182.1\| cytochrome c oxidase family protein [Aspergillus fumigatus Af293], gi\|6... gi\|159127200 - gi\|159127200\|gb\|EDP52315.1\| cytochrome c oxidase family protein [Aspergillus fumigatus A1163]	58.0	[0..2]	[58..4]

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Predicted Domain #1

Region A:
Residues: [1-59]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIAPITGTI KRRVIMDIVL GFSLGGVMAS YWWWGFHMDK INKREKFYAE LAERKKQEN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.15
Match:	1occI
Description:	Mitochondrial cytochrome c oxidase subunit VIc
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits