YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS29B
Organism:	Saccharomyces cerevisiae
Length:	56 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS29B.

Description	E-value	Query Range	Subject Range
gi\|222625880, gi... - gi\|222625880\|gb\|EEE60012.1\| hypothetical protein OsJ_12757 [Oryza sativa Japonica Group], gi\|1087113...	111.0	[0..1]	[54..1]
gi\|50749078 - gi\|50749078\|ref\|XP_426478.1\| PREDICTED: similar to ribosomal protein S29 [Gallus gallus]	105.0	[0..1]	[54..1]
gi\|76671099 - gi\|76671099\|ref\|XP_871692.1\| PREDICTED: similar to 40S ribosomal protein S29 [Bos taurus]	102.0	[0..1]	[54..156]
gi\|28316886 - gi\|28316886\|gb\|AAL68340.2\| RH06643p [Drosophila melanogaster]	96.0	[0..1]	[54..13]
gi\|55233760, gi\|... - gi\|58395808\|ref\|XP_321509.2\| ENSANGP00000018161 [Anopheles gambiae str. PEST], gi\|55233760\|gb\|EAA013...	94.0	[0..1]	[54..26]
gi\|109083504 - gi\|109083504\|ref\|XP_001098037.1\| PREDICTED: similar to ribosomal protein S29 isoform 2 [Macaca mulat...	92.0	[0..1]	[54..1]
RS29_PLUXY - 40S ribosomal protein S29 OS=Plutella xylostella GN=RpS29 PE=3 SV=1	92.0	[0..1]	[54..1]
gi\|60811362 - gi\|60811362\|gb\|AAX36170.1\| ribosomal protein S29 [synthetic construct]	91.0	[0..1]	[54..1]
RS29_SCALT - 40S ribosomal protein S29 OS=Scarabaeus laticollis GN=RpS29 PE=3 SV=1	91.0	[0..1]	[54..1]
gi\|114565502 - gi\|114565502\|ref\|XP_001139866.1\| PREDICTED: similar to ribosomal protein S29 [Pan troglodytes]	91.0	[0..1]	[54..1]

Back

Predicted Domain #1

Region A:
Residues: [1-56]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHENVWFSH PRRFGKGSRQ CRVCSSHTGL VRKYDLNICR QCFREKANDI GFHKYR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.207608
Match:	PF00253.12
Description:	No description for PF00253.12 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.358	N/A	N/A	a.140.4	Recombination endonuclease VII, C-terminal and dimerization domains
View	Download	0.271	N/A	N/A	a.60.1	SAM/Pointed domain
View	Download	0.214	N/A	N/A	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits