YRC Public Data Repository - Protein Structure Prediction

Protein:	YDL057W
Organism:	Saccharomyces cerevisiae
Length:	328 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL057W.

Description	E-value	Query Range	Subject Range
gi\|207346946 - gi\|207346946\|gb\|EDZ73284.1\| YDL057Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190405067 - gi\|190405067\|gb\|EDV08334.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YD057_YEAST - Putative uncharacterized protein YDL057W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151941942 - gi\|151941942\|gb\|EDN60298.1\| conserved protein [Saccharomyces cerevisiae YJM789] YDL057W - Putative protein of unknown function; YDL057W is not an essential gene	5.0E-59	[1..328]	[1..328]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-41	[8..311]	[20..307]
gi\|15228202, gi\|... - gi\|6522542\|emb\|CAB61985.1\| putative protein [Arabidopsis thaliana], gi\|51969610\|dbj\|BAD43497.1\| unkn...	2.0E-40	[49..314]	[58..305]
gi\|34913068, gi\|... - gi\|34913068\|ref\|NP_917881.1\| P0013G02.26 [Oryza sativa (japonica cultivar-group)], gi\|18461257\|dbj\|B...	2.0E-39	[34..310]	[61..321]
gi\|18482507 - gi\|18482507\|gb\|AAL73575.1\| chloride peroxidase [Burkholderia cepacia]	4.0E-39	[53..312]	[3..273]
gi\|226245921, gi... - gi\|226350009\|ref\|YP_002777122.1\| putative 2-hydroxy-6-oxo-7-methylocta-2,4- dienoate hydrolase [Rhod... gi\|110823808, gi... - gi\|111024829\|ref\|YP_707249.1\| 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase [Rhodococcus jostii RHA1],... gi\|3273239 - gi\|3273239\|dbj\|BAA31163.1\| EtbD1 [Rhodococcus sp.] gi\|33867231, gi\|... - gi\|33867231\|ref\|NP_898789.1\| HOMODA-hydrolase (IpbD) [Rhodococcus erythropolis], gi\|33669065\|gb\|AAP7...	9.0E-38	[47..312]	[6..274]

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Predicted Domain #1

Region A:
Residues: [1-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKHVTVQI QSAPPSYIKL EANEKFVYIT STMNGLSYQI AAIVSYPEKR NSSTANKEDG  60
   61 KLLCKENKLA LLLHGSQSHK NAIYQTLLAK RLAEFGYWVL RIDFRGQGDS SDNCDPGLGR 120
  121 TLAQDLEDLS TVYQTVSDRS LRVQLYKTST ISLDVVVAHS RGSLAMFKFC LKLHAAESPL 180
  181 PSHLINCAGR YDGRGLIERC TRLHPHWQAE GGFWANGPRN GEYKDFWIPL SETYSIAGVC 240
  241 VPEFATIPQT CSVMSCYGMC DHIVPISAAS NYARLFEGRH SLKLIENADH NYYGIEGDPN 300
  301 ALGLPIRRGR VNYSPLVVDL IMEYLQDT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	1a8s__
Description:	Chloroperoxidase F
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	1.41921458445725	bayes_pls_golite062009
catalytic activity	0.853693238072967	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.642148959457837	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: