YRC Public Data Repository - Protein Structure Prediction

Protein:	BSC1
Organism:	Saccharomyces cerevisiae
Length:	328 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BSC1.

Description	E-value	Query Range	Subject Range
gi\|172525 - gi\|172525\|gb\|AAA35014.1\| S2 protein	239.0	[0..1]	[156..53]
PTPRC - protein tyrosine phosphatase, receptor type, C	226.0	[0..127]	[327..25]
gi\|114571686, gi... - gi\|114571686\|ref\|XP_001142088.1\| PREDICTED: protein tyrosine phosphatase, receptor type, C isoform 1...	219.0	[0..127]	[327..25]
gi\|40746483, gi\|... - gi\|67517057\|ref\|XP_658413.1\| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	196.0	[0..60]	[259..1563]
gi\|159131590 - gi\|159131590\|gb\|EDP56703.1\| DNA-dependent RNA polymerase II largest subunit, putative [Aspergillus f... gi\|70996164, gi\|... - gi\|70996164\|ref\|XP_752837.1\| DNA-dependent RNA polymerase II largest subunit [Aspergillus fumigatus ...	194.0	[0..60]	[264..1564]
gi\|83767526, gi\|... - gi\|9955855\|dbj\|BAB12227.1\| RNA polymerase II largest subunit [Aspergillus oryzae], gi\|83767526\|dbj\|B... gi\|169770395 - gi\|169770395\|ref\|XP_001819667.1\| hypothetical protein [Aspergillus oryzae RIB40]	194.0	[0..60]	[259..1564]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQNILHYD MDVTSVSWVK DNTYQITIHV KAVKDIPLKY LWSLKIIGVN GPSSTVQLYG  60
   61 KNEKTYLISD PT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.832	b.61.7	Description not found.

Predicted Domain #2

Region A:
Residues: [73-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFTSTFQVYA YPSSDGCTVW MPNFQIQFEY LQGDAAQYWQ TWQWGTTTFD LSTGCNNYDN  60
   61 QGHSQTDFPG FYWTYQCKGN NDGTCTKASS SSITTSSITT SSTTTSSTTT SSTTTSSSTT 120
  121 SSSTTSSSTT SSSTTSSSTT SSSTTSSSTT SSSTTSSSTT SSSTTSSSTT SSSTKTSTTT 180
  181 SSTVKSSSTT SIDFTTSVDS HTSSSVADIY RSRTSTDVTT LAASTSPFSS FTSSDSSSSS 240
  241 DVTSSTIQTT SVDPTT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits