| Protein: | GPR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 961 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPR1.
| Description | E-value | Query Range |
Subject Range |
|
|
1094.0 | [0..1] | [961..1] |
|
|
480.0 | [0..9] | [874..7] |
|
|
287.0 | [0..30] | [286..22] |
|
|
285.0 | [0..51] | [303..26] |
|
|
277.0 | [0..22] | [300..21] |
|
|
118.0 | [0..272] | [621..7] |
|
|
115.0 | [0..301] | [627..29] |
|
Region A: Residues: [1-288] |
1 11 21 31 41 51
| | | | | |
1 MITEGFPPNL NALKGSSLLE KRVDSLRQLN TTTVNQLLGL PGMTSTFTAP QLLQLRIIAI 60
61 TASAVSLIAG CLGMFFLSKM DKRRKVFRHD LIAFLIICDF LKAFILMIYP MIILINNSVY 120
121 ATPAFFNTLG WFTAFAIEGA DMAIMIFAIH FAILIFKPNW KWRNKRSGNM EGGLYKKRSY 180
181 IWPITALVPA ILASLAFINY NKLNDDSDTT IILDNNNYNF PDSPRQGGYK PWSAWCYLPP 240
241 KPYWYKIVLS WGPRYFIIIF IFAVYLSIYI FITSESKRIK AQIGDFNH
|
| Detection Method: |  |
| Confidence: | 5.44 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [289-680] |
1 11 21 31 41 51
| | | | | |
1 NVLEEEKEKK KLFGLGHWGK AKWYFRSYFK LPLLHLLRNL KNFFTISFID PNEETDDSGS 60
61 SNGTFNFGES SNEIPTLFRK TNTGSDENVS ASGGVRLLDY NSAKPLDMSK YAMSEQPDLE 120
121 RNNPFDCEND ITLNPSELVS KQKEHKVTFS VENEGLDTRK SSMLGHQTFS CQNSLESPLA 180
181 MYDNKNDNSD ITSNIKEKGG IINNNSNNDD DDNNNNNDND NDNNNSNNNN NNNNNNNNNN 240
241 NNNNNNNNNN NNNNNNSNNI KNNVDNNNTN PADNIPTLSN EAFTPSQQFS QERVNNNADR 300
301 CENSSFTNVQ QHFQAQTYKQ MKKRRAQIQK NLRAIFIYPL SYIGIWLFPI IADALQYNHE 360
361 IKHGPTMWVT YIDTCVRPLS CLVDVIVYLF KE
|
| Detection Method: | |
| Confidence: | 3.045757 |
| Match: | 1zrlA |
| Description: | Crystal structure of EBA-175 Region II (RII) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [681-880] |
1 11 21 31 41 51
| | | | | |
1 KPWNYSWAKT ESKYLIEKYI LKGELGEKEI LKFCHSNWGK RGWYYRGKWK KRKCWKYSTN 60
61 PLKRILWFVE RFFKQLFELK LHFSFYDNCD DFEYWENYYS AKDSNDNKRT ESDETKTNSS 120
121 DRSLPSNSLE LQAMLNNITA EEVEVPLFWR IIHHIPMLGG IDLDELNRLL KIRYNNDHFS 180
181 LPGLKFALNQ NKSHDKHQDV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [881-961] |
1 11 21 31 41 51
| | | | | |
1 STNSMVKSSF FSSNIVTNDD ENSIEEDKNL RYSDASASEN YLVKPTIPGT TPDPIIEAQN 60
61 DNDSSDSSGI DLIAFLRNGP L
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
