YRC Public Data Repository - Protein Structure Prediction

Protein:	YDL027C
Organism:	Saccharomyces cerevisiae
Length:	420 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL027C.

Description	E-value	Query Range	Subject Range
gi\|683670 - gi\|683670\|emb\|CAA88332.1\| unknown [Saccharomyces cerevisiae]	482.0	[0..1]	[264..1]
gi\|49527608 - gi\|49527608\|emb\|CAG61257.1\| unnamed protein product [Candida glabrata] gi\|49527608, gi\|... - gi\|50291727\|ref\|XP_448296.1\| unnamed protein product [Candida glabrata], gi\|49527608\|emb\|CAG61257.1\|...	74.0	[0..47]	[267..44]
gi\|49641502 - gi\|49641502\|emb\|CAH01220.1\| KLLA0C03872p [Kluyveromyces lactis] gi\|49641502, gi\|... - gi\|50304827\|ref\|XP_452369.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641502\|emb\|CAH0122...	57.0	[0..96]	[417..78]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKVPVGLAS RTRELMNSVT LNSLNNGKGF NMYLPGILRA FPKPVPSAIT SPAIPKYRGE  60
   61 SFQFRKLSCI SSNYCSTTHQ FLSSLKSSTS RLVGKRAFHS SRRAEIKFIF SSKSPKNGNK 120
  121 PFVKVYKVSP FFIIFATASI FTFILTSTIV VIPLIFHFFF PLLIMFFFFK QFKKWQKNIF 180
  181 YKDVLTSLPK TKLKITLPTM RSLQLQPMVQ SWKEISSRMG IPNEFAKGLN VDLVKQEETR 240
  241 KQFLSFLQKR VLESFTKNEL GIRSYFLGDS VEKWIKES

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [279-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YDLELDIDNC RSELRKFQTF IFSSVRYKLY LDSMKNLPLN PSKKLEGKKH IADVYVIILD  60
   61 ESFPAIMFNG GAYSKADFFK ILQESETSNS SKTLNTIIAI KSVNTLLSKH FVITTNGDSG 120
  121 EFFSKYNISK INDKNTEYTL KE