Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL025C.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..620] | [1..620] |
|
|
0.0 | [200..620] | [9..433] |
|
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0.0 | [200..620] | [9..430] |
|
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0.0 | [208..620] | [17..433] |
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0.0 | [200..620] | [9..426] |
|
|
0.0 | [252..620] | [23..389] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MVKETPLHSS SSTSLSSLFR PTKLKNLSAK IFNGGGNQSY SKTDDVSRSS SRSSKKNTDS 60
61 DQEDQIKYNK PNDRRSTIGK SPQGNGAL
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.299 | a.118.8 | TPR-like |
| View | Download | 0.323 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.429 | a.29.4 | RecG, N-terminal domain |
|
Region A: Residues: [89-168] |
1 11 21 31 41 51
| | | | | |
1 SKESHVVASS TLTGISPTSA KKAPIDYSPS RPLPNNHNPV RTGHTVPHLP HSIHNPINYI 60
61 HQGSKDAFHH PHPVRSTAHS
|
| Detection Method: | |
| Confidence: | 8.69897 |
| Match: | 1f3mA_ |
| Description: | pak1 autoregulatory domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [169-274] |
1 11 21 31 41 51
| | | | | |
1 NISTVSSAKS DTPSSNLSYQ AHMHPVEILQ KQIEDKHFMD SQASTPGSVE LQHNSSSGSD 60
61 DTSSRKKKSL RLTRFFKKIH NDYHDNHHHH HHHNRGSTPT KPKLNL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.461 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.533 | a.26.1 | 4-helical cytokines |
| View | Download | 0.491 | a.47.2 | t-snare proteins |
| View | Download | 0.650 | a.7.7 | BAG domain |
| View | Download | 0.550 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.432 | d.52.2 | GMP synthetase C-terminal dimerisation domain |
| View | Download | 0.412 | a.24.3 | Cytochromes |
| View | Download | 0.412 | a.118.1 | ARM repeat |
| View | Download | 0.409 | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.392 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.367 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.362 | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.355 | d.58.5 | GlnB-like |
| View | Download | 0.344 | a.118.1 | ARM repeat |
| View | Download | 0.339 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.337 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.336 | f.16.1 | Gated mechanosensitive channel |
| View | Download | 0.325 | d.58.16 | Poly(A) polymerase, C-terminal domain |
| View | Download | 0.317 | a.3.1 | Cytochrome c |
| View | Download | 0.315 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.310 | d.52.6 | BolA-like |
| View | Download | 0.299 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.291 | a.74.1 | Cyclin-like |
| View | Download | 0.289 | d.222.1 | YbaB-like |
| View | Download | 0.286 | a.3.1 | Cytochrome c |
| View | Download | 0.284 | a.1.1 | Globin-like |
| View | Download | 0.282 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.280 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.278 | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.268 | a.74.1 | Cyclin-like |
| View | Download | 0.259 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.251 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.244 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.231 | a.46.1 | Methionine synthase domain |
| View | Download | 0.229 | a.24.3 | Cytochromes |
| View | Download | 0.225 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.221 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.203 | d.212.1 | TolA/TonB C-terminal domain |
|
Region A: Residues: [275-356] |
1 11 21 31 41 51
| | | | | |
1 NTNENIVESN GKALYETDNP VELLEKYGIP GRKLGEGASG SVSVVERTDG KLFACKMFRK 60
61 PHLNNEGTNQ SQLANYSKKV TT
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|
Region B: Residues: [373-387] |
1 11 21 31 41 51
| | | | | |
1 LDMLTEGDTY LLVME
|
| Detection Method: | |
| Confidence: | 342.70927 |
| Match: | 1ia8A_ |
| Description: | Cell cycle checkpoint kinase chk1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [357-372] |
1 11 21 31 41 51
| | | | | |
1 EFCIGSTLHH ENIVET
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Region B: Residues: [388-396] |
1 11 21 31 41 51
| | | | | |
1 YAPYDFFNL
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Region C: Residues: [411-464] |
1 11 21 31 41 51
| | | | | |
1 FKQLCHGVNY LHSMGLAHRD LKLDNCVVTK DGILKLIDFG SAVVFQYPYE DTIV
|
| Detection Method: | |
| Confidence: | 342.70927 |
| Match: | 1ia8A_ |
| Description: | Cell cycle checkpoint kinase chk1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [397-410] |
1 11 21 31 41 51
| | | | | |
1 VMSNLMTQDE VNCY
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Region B: Residues: [465-620] |
1 11 21 31 41 51
| | | | | |
1 KSHGIVGSDP YLAPELLKQT SYDPRVADVW SIAIIFYCMV LKRFPWKAPK KSFNSFRLFT 60
61 EEPEDEDDIV RGPNKILRLL PRHSRTIIGR MLALEPKQRV LMNDVVKDDW LVSVPSCEVD 120
121 PTSGDLVEKP KNHKHHLVTE EELNELTKQH GNKDSN
|
| Detection Method: | |
| Confidence: | 342.70927 |
| Match: | 1ia8A_ |
| Description: | Cell cycle checkpoint kinase chk1 |
| Matching Structure (courtesy of the PDB): |
|
