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View Structure Prediction Details

Protein: ATP16
Organism: Saccharomyces cerevisiae
Length: 160 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP16.

Description E-value Query
Range		 Subject
Range
ATPE_LOTJA - ATP synthase epsilon chain, chloroplastic OS=Lotus japonicus GN=atpE PE=3 SV=1
 1.0E-37 [31..159] [2..129]
ATPE_SPIOL - ATP synthase epsilon chain, chloroplastic OS=Spinacia oleracea GN=atpE PE=1 SV=1
 3.0E-37 [31..158] [2..128]
ATPE_OENEH - ATP synthase epsilon chain, chloroplastic OS=Oenothera elata subsp. hookeri GN=atpE PE=3 SV=1
gi|169142695, gi... - gi|169142695|ref|YP_001687122.1| ATP synthase epsilon subunit [Oenothera argillicola], gi|159792933|...
gi|159895542, gi... - gi|169143016|ref|YP_001687436.1| ATP synthase epsilon subunit [Oenothera parviflora], gi|159895542|g...
gi|159793103, gi... - gi|169142930|ref|YP_001687352.1| ATP synthase epsilon subunit [Oenothera biennis], gi|159793103|gb|A...
gi|159895457, gi... - gi|169142845|ref|YP_001687268.1| ATP synthase epsilon subunit [Oenothera glazioviana], gi|159895457|...
 2.0E-36 [31..159] [2..129]
ATPE_NICSY - ATP synthase epsilon chain, chloroplastic OS=Nicotiana sylvestris GN=atpE PE=3 SV=1
ATPE_TOBAC - ATP synthase epsilon chain, chloroplastic OS=Nicotiana tabacum GN=atpE PE=3 SV=1
 2.0E-36 [31..159] [2..129]
ATPE_CUSRE - ATP synthase epsilon chain, plastid OS=Cuscuta reflexa GN=atpE PE=3 SV=1
 3.0E-36 [31..158] [2..128]
ATPE_PSINU - ATP synthase epsilon chain, chloroplastic OS=Psilotum nudum GN=atpE PE=3 SV=1
 6.0E-36 [32..159] [2..128]
ATP4_IPOBA - ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1
 1.0E-35 [23..159] [61..198]
ATPE_ARATH - ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana GN=atpE PE=1 SV=2
 2.0E-35 [31..159] [2..129]
ATPE_ANTFO - ATP synthase epsilon chain, chloroplastic OS=Anthoceros formosae GN=atpE PE=2 SV=2
 2.0E-35 [31..159] [2..129]

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Predicted Domain #1
Region A:
Residues: [1-117] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSIIGKSA SRSLNFVAKR SYAEAAAASS GLKLQFALPH ETLYSGSEVT QVNLPAKSGR  60
   61 IGVLANHVPT VEQLLPGVVE VMEGSNSKKF FISGGFATVQ PDSQLCVTAI EAFPLES

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 113.68867
Match: 1e79H_
Description: Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [118-160] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSQENIKNLL AEAKKNVSSS DAREAAEAAI QVEVLENLQS VLK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 113.68867
Match: 1e79H_
Description: Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase N-terminal domain
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle