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View Structure Prediction Details

Protein: YCR100C
Organism: Saccharomyces cerevisiae
Length: 316 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCR100C.

Description E-value Query
Range
Subject
Range
YCZ0_YEAST - Uncharacterized protein YCR100C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR100C ...
YCR100C - Putative protein of unknown function
0.0 [1..316] [1..316]
gi|189442825 - gi|189442825|gb|AAI67251.1| Sortilin-related VPS10 domain containing receptor 3 [synthetic construct...
SORC3_MOUSE - VPS10 domain-containing receptor SorCS3 OS=Mus musculus GN=Sorcs3 PE=1 SV=1
6.0E-99 [5..314] [409..700]
gi|18032275 - gi|18032275|gb|AAL56667.1|AF284756_1 VPS10 domain receptor SorCS [Homo sapiens]
3.0E-97 [6..306] [390..668]

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Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTDIWISN DASTFQKAQL PTQLRHVKVI KIREDSIGRI ILLISTEITN EENADPDLSE  60
   61 IFISDSQGLK FSPVEWTPNH QFGNFRLTFP DFLKGTIFGS FHPSIDYS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.431 N/A N/A b.61.4 Quinohemoprotein amine dehydrogenase A chain, domain 3
View Download 0.416 N/A N/A d.58.18 Regulatory domain in the aminoacid metabolism
View Download 0.348 N/A N/A d.52.3 Prokaryotic type KH domain (KH-domain type II)
View Download 0.313 N/A N/A b.60.1 Lipocalins
View Download 0.299 N/A N/A b.60.1 Lipocalins
View Download 0.256 N/A N/A d.105.1 Clathrin adaptor appendage, alpha and beta chain-specific domain
View Download 0.230 N/A N/A b.61.1 Avidin/streptavidin
View Download 0.224 N/A N/A d.52.7 Ribosome-binding factor A, RbfA
View Download 0.209 N/A N/A b.18.1 Galactose-binding domain-like
View Download 0.204 N/A N/A c.47.1 Thioredoxin-like

Predicted Domain #2
Region A:
Residues: [109-316]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHQVNYTENI AGGETKISVD NGLTWSNLKV VDEENADSFG CDITRPERCS LQGYFYNLKL  60
   61 SNPSAGIILM TGSVGDDNEF DRKDRKTFIS RDGGLTWRVA HNSSGLYATG DLGNIIVYIP 120
  121 SPSYKDGDVQ SKLYFSLDQG RTWNQYELVD ALFYIHPLEL INTTPDGSGS KFILSGHLIT 180
  181 TASQEGNNTN ISYIARSVLY AIDFSAAF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle