YRC Public Data Repository - Protein Structure Prediction

Protein:	YCR099C
Organism:	Saccharomyces cerevisiae
Length:	155 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCR099C.

Description	E-value	Query Range	Subject Range
VTH1_YEAST - VPS10 homolog 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTH1 PE=1 SV=1 VTH1 - Putative membrane glycoprotein with strong similarity to Vth2p and Pep1p/Vps10p, may be involved in ...	2.0E-61	[5..155]	[566..716]
gi\|18032275 - gi\|18032275\|gb\|AAL56667.1\|AF284756_1 VPS10 domain receptor SorCS [Homo sapiens]	3.0E-54	[6..154]	[660..812]
gi\|13938659 - gi\|13938659\|gb\|AAH07486.1\| Sorcs1 protein [Mus musculus]	4.0E-54	[6..154]	[183..335]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSIFLLHFD YKTCEEEDFE DWNLADGKCL NGAKYMYKRR KQDARCLVKR TFKDMILHEI  60
   61 PCDSCTESDY ECSSEFVRDA KGDCIPDYDQ IALSDICDKA NGETVSLEPL QLIKGDKCKK 120
  121 PMEIEAMNIP CEKILRESSN GKKIATIENK FDFEI

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.07
Match:	1jv2B
Description:	Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits